Cpip012091.1
Basic Information
- Insect
- Culex pipiens
- Gene Symbol
- -
- Assembly
- GCA_016801865.2
- Location
- NC:223731466-223732914[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-08 1.1e-05 25.6 0.0 2 34 19 50 18 58 0.91 2 2 4 2.5e+03 -1.2 0.0 24 32 411 419 411 419 0.88
Sequence Information
- Coding Sequence
- ATGCCCCGCGTGTACAAGAGAGTGCCCGGTTCACGGGCATACCGAGATTACGAGGACGACAACCTCCAGAAATGTCTCAAGGCGATCGCAAGAGGAATGACGCACCGGGAGGCTTCCGAGGCTTACGGAATTCCAAAAAGCACAATCGGAAATAAGCTCTACACAGACCGGAACAAGGACGTCGGCGGCCAGCGCGTTTTCACGGATGAAGAGGAGCGTGCATTCGTGAGATGCTTGGTCACAATGGCGGAATTCGGATTTCCGGTTAACGAGGATGACCTCCGTTATGTTGTGAAGCACTACCTCACGAAAGTGGGACGGAACGTAGAGCGCTTCCAAGAGAACTTTCCTGGACGCGATTGGACGAAGTCCTTCCTGAGTCGTCATCCGGATCTTTCCGTGAGATTTGTGGCCAACATAAAGAAAAGCCGGGCTAAAATCACTGCGGAGATTTTGACGGAGTATATAAACAACCTTCTGGAAGTGGCCGTTGGAGTACCCCCAGAAAATTTCTGGAACTTCGATGAATCAAACGTGACGGACGACCCAGGCAGCAGGAAGTGCATTGTGAAGCGCGGTGTCAAGTATCCCGCGAATATAATGGACACGTCCAAGAGCAGTATTTCCATTATGATGGCCGGAAGTGCAGCGGGTGAGGTTTTGCCTCCCTACGTGGTGTACAAATACAACAACTCTACAAGTGGCTGGTTCGACACCGCCATTTTTGAGGACTGGTTCGAGTTCCATTTGCTGCCGACCTTGAAGAAGCGCAGTGGTAAGAAGGTCGTGATCGGTGACAACGTCAGCTCGCACTTTTCGCCGCGTGTGCTGGAACTCTGCCAGATGCACAACATTTGTTTTGTGTGCCTCCCACCGAACTCAACGCACATCACCCAGCCCCTCGACGTGGCCTTCTTCGGGCCAATGAAGAAGCACTGGAGACAGATTCTGCGTTCCTACAAGGAGAAGAGTTCGAACTCTGCGACAAGTCTACAAAAACCACATTTCCCTGGATTGCTCAACCAGTTGATGGAGGCCATCAAACCGAACCAGAAGCACAACATGAAGGCGGGTTTCAAAAAATGCGGCATCTTTCCGACCTCGGTTGAACCTCTACTTAAGAGCGTTTCCTGTGTGCCAAGCTCGCCGGATCTAATCGAAGATAGCTTCAAGGATTTCTTGAACGCGAAACGCACTGCTGTTGTTGGGGGTGCCCCTACTAAACGTCGGAAGAAGTTCGACATTCCCGCGGGAACAAGCGTCACTGCTGAAGATTTGGCCAGGATCTCAAATCAAGAAAATGGACAACGAAAGAAACCGACGGAGAAACCTCCGAAGAAACCGGCTGTAAAACCGACCAAGAAGCCGGTAACTCGACGGGTGCTCAAGGAAAACTAA
- Protein Sequence
- MPRVYKRVPGSRAYRDYEDDNLQKCLKAIARGMTHREASEAYGIPKSTIGNKLYTDRNKDVGGQRVFTDEEERAFVRCLVTMAEFGFPVNEDDLRYVVKHYLTKVGRNVERFQENFPGRDWTKSFLSRHPDLSVRFVANIKKSRAKITAEILTEYINNLLEVAVGVPPENFWNFDESNVTDDPGSRKCIVKRGVKYPANIMDTSKSSISIMMAGSAAGEVLPPYVVYKYNNSTSGWFDTAIFEDWFEFHLLPTLKKRSGKKVVIGDNVSSHFSPRVLELCQMHNICFVCLPPNSTHITQPLDVAFFGPMKKHWRQILRSYKEKSSNSATSLQKPHFPGLLNQLMEAIKPNQKHNMKAGFKKCGIFPTSVEPLLKSVSCVPSSPDLIEDSFKDFLNAKRTAVVGGAPTKRRKKFDIPAGTSVTAEDLARISNQENGQRKKPTEKPPKKPAVKPTKKPVTRRVLKEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00400496;
- 90% Identity
- iTF_00400496;
- 80% Identity
- -