Cpip010269.1
Basic Information
- Insect
- Culex pipiens
- Gene Symbol
- -
- Assembly
- GCA_016801865.2
- Location
- NC:169662460-169665064[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-08 7.6e-06 26.1 0.0 2 37 19 54 18 59 0.89 2 2 4.1 2.6e+03 -1.3 0.0 24 32 428 436 428 436 0.88
Sequence Information
- Coding Sequence
- ATGCCCCGCGTATACAAGAGAGTGCCCGGTTCACGGGCATACCGAGATTACGAGGACGACAACCTCCAGAAATGTCTCAAGGCGATCGCAAGAGGAATGACGCACCGGGAGGCTTCCGAGGCTTACGGAATTCCAAAAAGCACAATCGGAAATAAGCTCTACTCAGACCGGACCAAGGACGTCGGCGGCCAGCGCGTTTTCACGGATGAAGAGGAGCGTGCATTCGTGAGATGCTTGGTCACAATGGCGGAATTCGGATTTCCGGTTACCGAGGATGACCTCCGTTATGTCGTGAAGCACTACCTCACGAAAGTGGGACGGAACGTAGAGCGCTTCCAAGAGAACTTTCCTGGACGCGATTGGACGAAGTCCTTCCTGAGTCGTCATCCGGATCTTTCCGTGAGATTTGTGGCCAACATCAAGAAAAGCCGGGCTAAAATCACTGCGGAGATTTTGACGGAGTATATAAACAACCTTCTGGAAGTGGCCGTTGGAGTACCCCCAGAAAATTTCTGGAACTTCGATGAATCAAACGTGACAGACGACCCAGGCAGCCGGAAGTGCATCGTAAAGCGCGGTGTCAAGTATCCCGCGAATATAATGGACACGTCCAAGAGCAGTATTTCCATTATGATGGCCGGAAGTGCAGCGGGCGAGGTTTTGCCTCCCTACGTGGTGTACAAGTCGGCCAAGCTGTGGAGTACCTGGGTTGACAACGGCCCGCCCGGAACCAGATACAACAACTCTACAAGTGGCTGGTTCGACACCGCCATTTTTGAGGACTGGTTCGAGTTCCATCTACTGCCGACCTTGAAGAAGCGCAGTGGTAAGAAGGTCGTGATCGGTGACAACGTCAGCTCGCACTTTTCGCCACGTGTGCTGGAACTCTGCCAGatgcacaccatttgttttgtgtGCCTCCCACCGAACTCAACGCACATCACCCAGCCCCTCGACGTGGCCTTCTTCGGGCCAATGAAGAAACACTGGAGACAGATTCTGCAATCCTACAAGGAGAAGAGTTCGAACTCTGCGACAACTCTACAAAAACCACATTTCCCTGGATTGCTCAACCAGTTGATGGAGGCCATCAAACCGAACCAGAAGAACAACATGAAGGCGGGTTTCAAAAAATGCGGCATCTTCCCGACCTCGGTTGAACCTCTACTTAAGAGCGTTTCCTGTGTGCCAAGCTCGCCGGATCTAATCGAAGATAGCTTCAAGGATTTCTTGAACGCGAAACGCACTGCTGTTGTTGGGGGTGCCCCTACTAAACGTCGGAAGAAGTTCGACATTCCCGCGGGAACAAGCGTCACTGCTGAAGATTTGGCCAGGATCTCAAATCAAGAAAATGGACAACGAAAGAAACCGACGGAGAAACCTCCGAAGAAACCGGCTGGAAAACCGACCAAGAAGCCGGTAGCTCGACGGGTGCTCAAGGAAAACTAA
- Protein Sequence
- MPRVYKRVPGSRAYRDYEDDNLQKCLKAIARGMTHREASEAYGIPKSTIGNKLYSDRTKDVGGQRVFTDEEERAFVRCLVTMAEFGFPVTEDDLRYVVKHYLTKVGRNVERFQENFPGRDWTKSFLSRHPDLSVRFVANIKKSRAKITAEILTEYINNLLEVAVGVPPENFWNFDESNVTDDPGSRKCIVKRGVKYPANIMDTSKSSISIMMAGSAAGEVLPPYVVYKSAKLWSTWVDNGPPGTRYNNSTSGWFDTAIFEDWFEFHLLPTLKKRSGKKVVIGDNVSSHFSPRVLELCQMHTICFVCLPPNSTHITQPLDVAFFGPMKKHWRQILQSYKEKSSNSATTLQKPHFPGLLNQLMEAIKPNQKNNMKAGFKKCGIFPTSVEPLLKSVSCVPSSPDLIEDSFKDFLNAKRTAVVGGAPTKRRKKFDIPAGTSVTAEDLARISNQENGQRKKPTEKPPKKPAGKPTKKPVARRVLKEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00400498;
- 90% Identity
- iTF_00400498;
- 80% Identity
- -