Basic Information

Insect: Ctenicera cuprea
Gene Symbol: -
Assembly: GCA_958336395.1
Location: OY284487.1:42013683-42015295[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.058 6.4 9.1 1.7 2 23 158 180 157 180 0.93

2 10 7.1e-05 0.0079 18.2 0.6 1 23 186 208 186 208 0.98

3 10 0.034 3.8 9.8 1.0 1 23 214 236 214 236 0.97

4 10 8.6e-06 0.00095 21.1 2.0 1 23 242 264 242 264 0.97

5 10 6.6e-06 0.00074 21.5 1.3 1 23 273 295 273 295 0.98

6 10 6.4e-08 7.1e-06 27.8 0.6 1 23 301 323 301 323 0.99

7 10 9.3e-05 0.01 17.9 0.8 1 23 329 351 329 351 0.96

8 10 6.4e-05 0.0072 18.4 3.3 1 23 357 379 357 379 0.98

9 10 4.7e-06 0.00052 21.9 2.5 1 23 385 407 385 407 0.98

10 10 0.00028 0.031 16.4 5.8 1 23 413 436 413 436 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.058	6.4	9.1	1.7	2	23	158	180	157	180	0.93
2	10	7.1e-05	0.0079	18.2	0.6	1	23	186	208	186	208	0.98
3	10	0.034	3.8	9.8	1.0	1	23	214	236	214	236	0.97
4	10	8.6e-06	0.00095	21.1	2.0	1	23	242	264	242	264	0.97
5	10	6.6e-06	0.00074	21.5	1.3	1	23	273	295	273	295	0.98
6	10	6.4e-08	7.1e-06	27.8	0.6	1	23	301	323	301	323	0.99
7	10	9.3e-05	0.01	17.9	0.8	1	23	329	351	329	351	0.96
8	10	6.4e-05	0.0072	18.4	3.3	1	23	357	379	357	379	0.98
9	10	4.7e-06	0.00052	21.9	2.5	1	23	385	407	385	407	0.98
10	10	0.00028	0.031	16.4	5.8	1	23	413	436	413	436	0.98

Sequence Information

Coding Sequence: ATGGGGGCGCGGTGCCGCTTGTGTGCTGAAAGTTATGACGATTTGGTGGATGCGTTGGACGAGGCAGAATTGCCTGCCAAGATCCTTCAGTTTTTTCGGgtaaaaattgttgttgaagATCGACTACCCACTACAGTATGTCGACGGTGTTATGATGCAATTAACGCCACTTGGGAATTTAACGATCAAATACAAAAAGCACAAGAATTACTTGCAATAGAAGAAGCTAACAAAGTTGCGCTCGAACAACAAAATAAGAATTCTGTAGTGATGGTAGAATGTGTATTATTGGATTCTGTATCTGAACAGCCAAAACGTAAAATGAAATCTAAGATTCGAAGAATTAAGAAAAGGGAGTCTGTAAGTTCAGATTCAGAAGGTTTATTGTCAGGTGCCAGCGATGCCGAATGGCATGAGGATGGGAGTATAACCTTACGCCATTGTTTAGATGGCTGGGATGCCTATCCATGGACATGCTGCGATTGTCAGCAGAACTTATCGAGTGCTGACGATCTTCGTGATCATCATTCGCTAGTTCATGGACAGTCGGCAAAATACGTCTGTGCTGAGTGCCCAAAAATGTACACAAAATACAGTACATTCATAAGTCATGTTCGCAGTCATCGAGAGCAGTTGCGTTTTTGCTGCGATATTTGCGGGAAATGGTTTGGGACTAGCCGGGCACAAGAACAACATCGTGCCACACATTGCGACCAGCGACCTCACAGCTGTACCACATGTGGGAAGAGATTTCGTGTCCAGTCTTCTCTGTTGGTTCATGCACGTTCACATTTACCTGTTGAATTAAAGAATAAACACCAGTGCGATCAGTGTCCGAAACGGTTTGGGACAAAACCTAATCTTATGGCGCATAAAAGAATTCATTCGGGTATTCGTGACTTCACGTGTGATCAGTGTGGAAAAAGTTTTGTACAAAAGGGTAATTTGGACAATCATATGTTAACACATACCATGGCTCGACCTTTTACATGTCTTACTTGTGGGAAGGCATTTAAAACGGCTGTTCGCTTGCGGAAACACAGCTCGGTGCATTCGGGATTAAAGCCTCATCAGTGCGATGTTTGTGGGCGGCAGTTTCGTGAACGGGGCACTCTAAAAGAGCATCATCGAATTCATACCGGTGCTATGCCATTTACATGCGAGTATTGTGGGAAGTCATTTCGATTTAAGGGAGTATTAACCACTCACCGACGCCAGCACACAGGAGAACGGCCATATTCATGCCTAGAGTGTCAGCATCATTTTACAAACTGGCCTAATTACAATAAGCATATGAAAAGGCGCCACGGTATTAACACAAGTGTTACAGTGCGTAAGCCGCAATCAATTCCACCAACTGGTATGCCTCAACGCAATCCTCCAGGTACTGTTTTAGCTCCACCACAGCCAGCTACCGTAACAATGTTATCAGCGGTGCCACCAACGGCTGCTGGAATCCCTGATAATTTTCCGGAAACTCCCCCTCCGTTTTATCCTGTTCTTAATTTATACAATCTCCCTGAGGAATTACTACAGCAACGTGTGTGA
Protein Sequence: MGARCRLCAESYDDLVDALDEAELPAKILQFFRVKIVVEDRLPTTVCRRCYDAINATWEFNDQIQKAQELLAIEEANKVALEQQNKNSVVMVECVLLDSVSEQPKRKMKSKIRRIKKRESVSSDSEGLLSGASDAEWHEDGSITLRHCLDGWDAYPWTCCDCQQNLSSADDLRDHHSLVHGQSAKYVCAECPKMYTKYSTFISHVRSHREQLRFCCDICGKWFGTSRAQEQHRATHCDQRPHSCTTCGKRFRVQSSLLVHARSHLPVELKNKHQCDQCPKRFGTKPNLMAHKRIHSGIRDFTCDQCGKSFVQKGNLDNHMLTHTMARPFTCLTCGKAFKTAVRLRKHSSVHSGLKPHQCDVCGRQFRERGTLKEHHRIHTGAMPFTCEYCGKSFRFKGVLTTHRRQHTGERPYSCLECQHHFTNWPNYNKHMKRRHGINTSVTVRKPQSIPPTGMPQRNPPGTVLAPPQPATVTMLSAVPPTAAGIPDNFPETPPPFYPVLNLYNLPEELLQQRV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00789625;
90% Identity: iTF_00789625;
80% Identity: -