Ccup011841.2
Basic Information
- Insect
- Ctenicera cuprea
- Gene Symbol
- salm
- Assembly
- GCA_958336395.1
- Location
- OY284487.1:32587789-32599371[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.93 1e+02 5.3 1.3 2 19 84 101 83 103 0.92 2 10 9.2e-06 0.001 21.0 0.9 1 23 409 431 409 431 0.98 3 10 1.3e-05 0.0014 20.6 1.9 1 23 437 459 437 459 0.98 4 10 0.12 13 8.1 3.8 2 23 765 786 764 786 0.98 5 10 7.9e-08 8.8e-06 27.5 0.6 1 23 792 814 792 814 0.97 6 10 0.00011 0.012 17.6 2.6 1 23 824 846 824 846 0.98 7 10 0.0047 0.53 12.5 2.1 2 23 1109 1130 1108 1130 0.97 8 10 3.4e-07 3.8e-05 25.5 1.3 1 23 1136 1158 1136 1158 0.99 9 10 2.6e-06 0.00028 22.8 4.0 3 23 1230 1250 1228 1250 0.96 10 10 3.7e-07 4.1e-05 25.4 0.9 1 23 1256 1278 1256 1278 0.98
Sequence Information
- Coding Sequence
- ATGCCAGATATTTCCTTTCTTTGGTTTTCACCGCAAGATATTTGTCCCCGTTGTTTGTCGTGCTCTTTTATGTCATTTTCAATGCGCAATGTAATGCGAGATGTTTATCCAAGTACCTGCGAGTTGGATTGTGATGACCGCATGGGCAGAACTCCAACCACTCATAATGCGGAACGAGCTTCACTATCGTCCGAAGAGGAAGGAAACACCGCAATCGCAAACGAGGAGTTATCAGACCTTGGTATACTTGTATGTTCGCGCTGTCACGAGCAGTTTACAGATGTCCATGAGTACATGCAACATAAGACTGGATGTGCAATTAAAGCCGAACAAGAAGAAGTAGCACCTTCTGATGCTGATGATATGGTAGTTTCCGAAATCGACGAAGAAGATGAAGAGTCTGGTGGAAAGCAACTAGAACAAGTAAGAAGGCATCGGCAAGATGCTGCTAATAACAACAGCGTTGAAGAAAGTTCTCCTGAAGACAATGAAACCTCTAGGCTGGGCTTTCAGTTTCCCGCGGCAACAGGCCACGTAACACTTGAAGCACtgcaaaatacaaaagttgcagTAGCACAATTCGCAGCCACAGCCATGGCTAACAATGTCGGTAATGAAACGGCGATACAAGAATTAGCGATGTTACAATCGACACTTTTCACCCTTCAACACCAACAAGTATTTCAGCTacagttaattaatcaattacaacAACAATTGTCGTTAAACCGAGTAAACGTAAATACCTCCACATCTCCACCACCAAAAACTGAACGACCTCCAACTCCCTCAAATCCTTCTCTTACTCCTCCGCCTCTTCCCCCACCTCCTCCCCCTCCTCAAATCCAACGTGAACCTTCTCCCATATTAAAAGAACCACCTCCTGTACCTTTGCCACCCCCTATCATTCAACCTTTAGAACCACAACCTCCTCCTGTTGAACCGCCTGTAGAAGTATCCATTCCATCTTCCATACCACTTTCGATTCAACCGCCCCTTTGTTCTATATCGTCATCATTAGCATCTACTATAATAACACATAATAACGAGCCACCTCCTTCTCTGGATGAGCCTAATACTTTGGAAATGCTGCAGAAACGAGCGCAGGAAGTGTTAGATAATGCAAGTCAAGGACTTTTAGCTAATAATTTAGCAGATGAGTTGGCATTCAGAAGAAAAGATTCTTTGTCATACGATAAAGGAAGAAGCGAACCATTCTTTAAGCATCGCTGTAGATACTGTGGTAAAGTTTTCGGATCAGACTCGGCTCTTCAAATACATATCCGTTCTCATACCGGCGAGCGTCCTTACAAGTGTAACGTGTGTGGTAGCAGGTTTACTACCAAAGGTAATTTGAAAGTCCACTTCCAAAGACATTCAGCTAAGTTTCCGCATATCAAAATGAATCCAAACCCTGTACCAGAACATTTAGATAAGTATCATCCGCCTTTGTTAGCTCAGTTAGGCCAACAATCGGCATTATCACCGGGAGGACCACCTCATCATCCTCCACATGGCTTTCCAGGATCATCACCTTTTCCATCTGCATCAATACCAATGTACAGACCTCCAGGGCCTCCCCCAGATTTGTTAAATAGTAGACTGCAGCCTTCATCACATCGACCGCAAGATGCCTCACTTAGACTATTTCCTCCCCATCCTCTATTTCTTAAGCGAGAGGAACAAGACGTACCAGAAAATTTAAGTAAACCAAATAGTAGATCTCCTGCCCTTCAAGAAACGGAATGTAAAACAGAACCCCCCAGTGAGAAGCGGGAAAACGAAGATCCAAAATCACAACTTATTGTTCCTCAAGTAACACCAAAACAAGAAATGGACACTGATGAACCAGAGCATGAATCGGAAAGGTTTCCATCGCCAACGCAATATGACGAATGTAGCACGGACAGTAAATATAGTAACGAAGATATGTTAGAGCAAAGAAGTCCTATGAATGAAAACTCTTGTAATGTCCAAGATGAACCAGAAAATTTATCTAACAAGAACAATGCAATTTCTATTCCTCTTAGTATATCTACCGGACAAAGACTTCCACCAAATTTTCCATTTGGTCAAACTACTTCGCCTCCAAGTAGTACGTCATCGGGAAGTTTAGGTTCTTTTCCACACTTTGATCCATCTAAAGATCCTGCAATTTATACAAACTTATTACCTAGACCGGGTAGTAATGATAACTCATGGGAAAGTCTCatagaaattacaaaaacctCGGAAACAACTAAACTGCAACAACTTGTAgacaatattgaaaataaattaactgaTCCAAATCAGTGCGTGATATGCCATCGAGTATTGTCTTGCAAAAGTGCGCTGCAAATGCATTATCGTACTCACACGGGAGAGCgaccatttaaatgtaaaatttgtggCAGAGCTTTCACCACTAAAGGCAACTTAAAAACGCATATGGGCGTTCATCGAGCTAAACCACCCATGAGAGTGCTCCACCAATGTCCGGTGTGTCACAAAAAATTTACGAATGCTCTTGTTTTACAACAACACATCCGTTTGCACACTGGCGAACCTACTGATCTCACTCCGGAGCAAATTCAAGCTGCGGAAGTAAAAGACTTACCTTCACCAGGTGGTTTTCCATCACTTCCTAATTCCATGAATCCATTCCTAAGTCACAATATTCCAATACCCGGCTTATCGCCGTTAGGTCCGGGCAGTTTACCCTTTCACATGAAATTTGATTCTGATGTGAAATCCGAGCAAGATTTTGGAGAAGACGATGACGGAGATGACGACGACATTAGCACATCAGACCAACATCGCTTTTCAGCATCTCCTGTTGTTTCTGAAAATCACGTTCCCACAACTACTACTCCACAGTATTCAACGTCGTCGGGAATTAGTTATTCCGCAGAAGATTTGTGTTCTAGAATAATAACTTCTACATCTCCTATGCAGAACGGTGATAAATCGCCTGCACAGTCGGGAATAACAAGTCCTGGAAGTTCAGAAATGCGTTCCTCTCCAAACCAAAGGTCCACACCCGTCCAGATACCCCGACCGCCGTCGTCACAACAACCTGGTAGTCCAACGCCTTCGGAGACCAATTCGTTGGGTGCACTCGACCTCACACGTTCAACGCAACCACTCATGCCAAGTTCTGGACCAAATCTCGCACCCTCGTCGCTGTTTTCTAACTTTGGCCTTCTACCTCCTTCCCAAGCAGGCACTCCACTTATGTCGTCGGCGTTATCATCGCTTACTACCACCGTACTAACATCCACGGCTTTCAATCCCCTTGGATTAATGTCTCCTGCGGCGATTCACATAGGTCGTGGAAATACCACGTGCAATATCTGCTTCAAAACCTTTGCCTGCAACTCAGCTCTGGAAATTCATTATCGTAGTCATACGAAGGAGCGACCTTTCAAGTGCAACATCTGTGATCGAGGATTTTCAACAAAAggCAATATGAAACAACATATGCTAACACATAAAATCCGTGATATGCCTCAACATATGTTTGAGAAGCCCCAAATCAAAGCTGATGAGCAACCATTGCCACCGCAAGAAAATCCACAGGAACCCGAAAAACCGAATCCACTACTACTAGAACCCCCCTGTGATCAGCTGCCCAAAAGAGCCCCTACAGAAATTGATATGCCGTTACCGAAACGGCCGCCAAGCTTGCAGAGTAGTAAACACTTGTGCCACGTGTGTAATAAGAACTTCTCATCAAGCTCGGCCTTGCAGATACACATGCGAACACATACGGGTGATAAACCATTCCGATGCACCGTATGTCAGAAGGCCTTCACTACAAAGGGTAACCTAAAGgtACACATGGGTACCCATATGTGGAGCAATGGAGCCTCGCGCCGCGGCAGACGCATGTCCTTAGACCTTCCACCCATTCCGATGACCCCCAAGGATTCCGAATTTCTGCAACGAAGGCCAGATCTCTTCTATCCATATCTCCCAGCTCCATTCCTTAACGGCATGCAGCAAAAGATGAATGAAATTTCGGTTATCCAGAACTCACACAATGGTCTAGTGGGTACTGGAAAATATGGCGGCCTGTTAGGGTTTAGTTACCCACCGTCAGAACCATTGCGCTCAAATGCTAATTCGCCAGAACGAACGAGCCCTACAAATAGAGAACCAGAGCGGTTATGGGATCTGCATTTTGAGCGAAAAGCTGCAAACGACTCTGCCCGCGAAGAGCTGCTGCCACCCAGCCGCGAAGGGCTAGCTGCGTAA
- Protein Sequence
- MPDISFLWFSPQDICPRCLSCSFMSFSMRNVMRDVYPSTCELDCDDRMGRTPTTHNAERASLSSEEEGNTAIANEELSDLGILVCSRCHEQFTDVHEYMQHKTGCAIKAEQEEVAPSDADDMVVSEIDEEDEESGGKQLEQVRRHRQDAANNNSVEESSPEDNETSRLGFQFPAATGHVTLEALQNTKVAVAQFAATAMANNVGNETAIQELAMLQSTLFTLQHQQVFQLQLINQLQQQLSLNRVNVNTSTSPPPKTERPPTPSNPSLTPPPLPPPPPPPQIQREPSPILKEPPPVPLPPPIIQPLEPQPPPVEPPVEVSIPSSIPLSIQPPLCSISSSLASTIITHNNEPPPSLDEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRRKDSLSYDKGRSEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPYKCNVCGSRFTTKGNLKVHFQRHSAKFPHIKMNPNPVPEHLDKYHPPLLAQLGQQSALSPGGPPHHPPHGFPGSSPFPSASIPMYRPPGPPPDLLNSRLQPSSHRPQDASLRLFPPHPLFLKREEQDVPENLSKPNSRSPALQETECKTEPPSEKRENEDPKSQLIVPQVTPKQEMDTDEPEHESERFPSPTQYDECSTDSKYSNEDMLEQRSPMNENSCNVQDEPENLSNKNNAISIPLSISTGQRLPPNFPFGQTTSPPSSTSSGSLGSFPHFDPSKDPAIYTNLLPRPGSNDNSWESLIEITKTSETTKLQQLVDNIENKLTDPNQCVICHRVLSCKSALQMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPMRVLHQCPVCHKKFTNALVLQQHIRLHTGEPTDLTPEQIQAAEVKDLPSPGGFPSLPNSMNPFLSHNIPIPGLSPLGPGSLPFHMKFDSDVKSEQDFGEDDDGDDDDISTSDQHRFSASPVVSENHVPTTTTPQYSTSSGISYSAEDLCSRIITSTSPMQNGDKSPAQSGITSPGSSEMRSSPNQRSTPVQIPRPPSSQQPGSPTPSETNSLGALDLTRSTQPLMPSSGPNLAPSSLFSNFGLLPPSQAGTPLMSSALSSLTTTVLTSTAFNPLGLMSPAAIHIGRGNTTCNICFKTFACNSALEIHYRSHTKERPFKCNICDRGFSTKGNMKQHMLTHKIRDMPQHMFEKPQIKADEQPLPPQENPQEPEKPNPLLLEPPCDQLPKRAPTEIDMPLPKRPPSLQSSKHLCHVCNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMWSNGASRRGRRMSLDLPPIPMTPKDSEFLQRRPDLFYPYLPAPFLNGMQQKMNEISVIQNSHNGLVGTGKYGGLLGFSYPPSEPLRSNANSPERTSPTNREPERLWDLHFERKAANDSAREELLPPSREGLAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00789605; iTF_01284997; iTF_00153833; iTF_00151851; iTF_00004080; iTF_01518320; iTF_00978662; iTF_01295425; iTF_01345900; iTF_00854673; iTF_00950131; iTF_00927990; iTF_00270274; iTF_00268951; iTF_00271680; iTF_01292403; iTF_00951188;
- 90% Identity
- iTF_00789605;
- 80% Identity
- -