Basic Information

Insect: Ctenicera cuprea
Gene Symbol: -
Assembly: GCA_958336395.1
Location: OY284487.1:16273899-16277049[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.6e-05 0.0029 19.6 0.1 1 23 175 197 175 197 0.98

2 12 0.0036 0.4 12.9 1.7 1 23 203 225 203 225 0.96

3 12 3.2e-05 0.0036 19.3 3.1 1 23 231 253 231 253 0.98

4 12 0.00026 0.029 16.4 1.4 3 23 267 287 265 287 0.95

5 12 0.00014 0.016 17.3 0.7 2 23 294 315 293 315 0.97

6 12 7.8e-07 8.7e-05 24.4 1.8 1 23 321 343 321 343 0.99

7 12 1.2e-05 0.0014 20.6 0.2 1 23 349 371 349 371 0.96

8 12 6.8e-06 0.00076 21.4 0.1 1 23 377 399 377 399 0.98

9 12 1e-06 0.00012 24.0 2.5 1 23 405 427 405 427 0.99

10 12 5.6e-06 0.00063 21.7 2.8 1 23 433 455 433 455 0.97

11 12 6e-06 0.00067 21.6 0.1 3 23 463 483 462 483 0.98

12 12 1.8e-06 0.0002 23.3 1.2 1 23 489 511 489 511 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.6e-05	0.0029	19.6	0.1	1	23	175	197	175	197	0.98
2	12	0.0036	0.4	12.9	1.7	1	23	203	225	203	225	0.96
3	12	3.2e-05	0.0036	19.3	3.1	1	23	231	253	231	253	0.98
4	12	0.00026	0.029	16.4	1.4	3	23	267	287	265	287	0.95
5	12	0.00014	0.016	17.3	0.7	2	23	294	315	293	315	0.97
6	12	7.8e-07	8.7e-05	24.4	1.8	1	23	321	343	321	343	0.99
7	12	1.2e-05	0.0014	20.6	0.2	1	23	349	371	349	371	0.96
8	12	6.8e-06	0.00076	21.4	0.1	1	23	377	399	377	399	0.98
9	12	1e-06	0.00012	24.0	2.5	1	23	405	427	405	427	0.99
10	12	5.6e-06	0.00063	21.7	2.8	1	23	433	455	433	455	0.97
11	12	6e-06	0.00067	21.6	0.1	3	23	463	483	462	483	0.98
12	12	1.8e-06	0.0002	23.3	1.2	1	23	489	511	489	511	0.98

Sequence Information

Coding Sequence: ATGGATATGAGCGTGTATTTAACTGCACCTTTGCAGTTAGACAAGATTTGCAGGGCATGTTTGACCGAAAAGGGTGATATGAGGCCCCTCTTTGGGGCTTGTCTCGATGAAATGTTGGTTTCGTTTGCTGCTATTCAGGTTCATGAAGATGACGGTTTACCTAATCTCATGTGTGTTCAATGTGTGCTTCAGTGTAGTCGAGCGTACACCTTCAAGCAACAATGTGAAAAGTCGGACAACATATTACAACAATACATGAGTCCAGAATTTCAGGATCAACTTGCCAAAACAATGATGGAACAGACAAAAGTAGAACAACTACAAGAACAATTACAGTTCACTGAAACGAATGAAACCATTGTTGGAGATGAAATTCCTGCTGAACTTGTAAATGTTAGCTATGCTGAGGATGGCAGCTACAAAATCGAAGTTAAAGGCGAAATTTACAACATGACAACTGATGGCGAGGAATTAGAAAAGAAGGACATAATCATAGATGAAGATAAATCTCAAAAACACAAGTATCCATGTTCAAAATGCGAAGAATCATTTCCACTTAAAGTTGATTTAAAGGTGCACATGATGAGTCACCCCAAAGAACTAGATCACATTTGCCATGTCTGTAATAAGGGGTTTCCGGAAGCCCGAATTTTAAAACGTCATCTCAAGATACATCTCGATAAGAAACCACATCAATGTGATCAGTGTGACATGTCCTTTGCTGAGAGCTCCAATTTGAGTAAACATAAGAAAAAACATACCGGAGAGCTGCGTAACATCAAGGGAAAGCCACATTTGTGTTCTGTATGTGGACGAGCATTCAAATGGGCTTCTAGTTTGTCTAAACATATGAAGTATCATACAGGGCATAAACTACTCACATGTAAATACTGCAGTAAGcaatacgtggaaGCAAGAAGTTTACGAATACACATAAGATCTCACACAGGTGAGAGACCGTATGTTtgtgatatttgtcaaaaaagtTTCACCCAAATCTGCAATCTCGAAAAACACTTAAGAGTACACACAGGCGAGAAACCCTTCTTATGTCCTACCTGCGGCAAGGGattcACTCAATCAGGTTACGTGGGAATTCATATGCGAACACACACTGGGGAAAGACCATATGTATGTACAACATGCGGTAAAGCTTTTGCAGGATCCAATACTCTAGCAATACATCAGCGCATTCATACGGGGGAGAAGCCCTATACATGTAATTTGTGCGGCAAATCATTTAGCCGACATGAAACCCTTGTTATACATACCAGATCGCATACAGGACATAAGCCTCATATTTGTTCTGTATGTAACAAAGGTTTCACATCTTCGGGACATCTTTCGGGGCATATGAGAAcccatacaggagagaaaccccATGGGTGTGGTGTTTGTGGAAAAAGattcgCTGGTTCAAGTAGTTTAAAGGTACACATGCGTGGccattctggtgaaaaaccatttatcTGCAAGTTTTGTAATAAAGGATTTGTGCAGTCAAGTTCGCTACAACAGCACATAAGCACTCACACTTTAGTTGCAAAGTCGAAATTGACAAAAGTAGAAACTGTACAAGTTGCTGAATTAATaaCCGGGGACGCCGTTCACACAGTACAAGTACAAGCTATAAGTTCTATCTAA
Protein Sequence: MDMSVYLTAPLQLDKICRACLTEKGDMRPLFGACLDEMLVSFAAIQVHEDDGLPNLMCVQCVLQCSRAYTFKQQCEKSDNILQQYMSPEFQDQLAKTMMEQTKVEQLQEQLQFTETNETIVGDEIPAELVNVSYAEDGSYKIEVKGEIYNMTTDGEELEKKDIIIDEDKSQKHKYPCSKCEESFPLKVDLKVHMMSHPKELDHICHVCNKGFPEARILKRHLKIHLDKKPHQCDQCDMSFAESSNLSKHKKKHTGELRNIKGKPHLCSVCGRAFKWASSLSKHMKYHTGHKLLTCKYCSKQYVEARSLRIHIRSHTGERPYVCDICQKSFTQICNLEKHLRVHTGEKPFLCPTCGKGFTQSGYVGIHMRTHTGERPYVCTTCGKAFAGSNTLAIHQRIHTGEKPYTCNLCGKSFSRHETLVIHTRSHTGHKPHICSVCNKGFTSSGHLSGHMRTHTGEKPHGCGVCGKRFAGSSSLKVHMRGHSGEKPFICKFCNKGFVQSSSLQQHISTHTLVAKSKLTKVETVQVAELITGDAVHTVQVQAISSI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01345867;
90% Identity: iTF_00789544;
80% Identity: -