Ccup031582.1
Basic Information
- Insect
- Ctenicera cuprea
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_958336395.1
- Location
- OY284491.1:11248159-11253569[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.18 1e+04 -2.9 1.0 242 279 25 62 14 81 0.51 2 3 5.1e-105 3e-100 337.1 35.3 1 300 156 450 156 450 0.91 3 3 0.022 1.3e+03 0.1 6.0 120 171 448 499 448 525 0.75
Sequence Information
- Coding Sequence
- ATGAGTGACACAGAATCCAGGAATTCCACTACTTCGGGTAGTCTTGATTCACTTGcagacattttaaataatttgaactcTGATGATGAAGAAATCGAAACATGCGACAACAATAAtactgataataaaaatatcaaaagtcaACAACAATTGAATAGTAAAGCAGTATCCGATTTGGAAGATGAAGATAACATTACAgaacaaataattagaaaagaTGAAGAATTCCGGATCAGTTCAGCTTTGGATTCATCTCGAACAACAGAAAATTTGGAACAAGTTCAACAAAGATCAGTTGTGGTGACGGATAACACtaacgcagaaaaatttaaCCTTCTGGGGACTACAGAAGATGAAACTGAGGATGCAGTGGAGTCTACAcggaagaaaattaataaaaaccatGATGCGGATTATTCAGAAAGTAGCGTTATTGAGCAGTTCCTTGGTCATTGTAATGATGATGCCGAAGCACGACTGTTGGCTCGACGACAGGCTAGGGCAGAGGCCAGAGATATTCGCATGAGAGAACTGGAGCGACAACAGAGGGAGCAAGAGGAGAGTGCTGACCGACAGTACGACATGCTGGAACAAACAACTCGAGCAGCCAGAACTGTCGGAAGCAGATACCTCTCAAGTCGGCGTAGCTCAGAAGACTCTCTTGAAGATGGGGGAAGCATTAGGGAGATACGGCATGAACTTAAAGAAATGGAAGAGAAGTTTCGCAAGGCTATGATAGCAAATGCTCAATTAGACAATGATAAAGCTTCGCAAACATATCAGTTGGAACTGCTTAAAGATAgGTTAGAAGAATTAGAAGAAGAGCATTCTCAGCTACGTCGAGAACATAGGGACAAATGCAGGGAACACGATCAGCTGAAGCGGTTAGCCGCGAGGTTGAAAGACGATTTGGCTGTGACTCGAGCAGAATTAGAAGAGCGTGATCGTTTAATTGACGAGAAAGGTTTAGTGATAGTAGTTGAGGATATTATTCCTTATGAAGAAGACAGTGTAGGAGATGTCAGCAATAACAGCATTAATAGTATTACTCCGAAAAAAGCACTTGTTAGCTCAGAAAATGCTCAGTTATTGGAAAATGCTGGAGAAGGAAGTCTAGATGTACGGTTATCGAGGTTTGCTTCAGAGAAAAAGGATCTTCAAGATCAAATCAGTCACTTAAGATTAGAATTAGAAGAAGAGAAAAGTAAAAAGAGGAAAACAAGTGGTGTTATTCTCAACGGACCTACGTCTGATGCGGATTATGAGGCCGACGATGTACAAAgggATGTTGTGAGACAgttagctgattttaaattcagAGCTCAAAAAGCTGAGCAAGATGTTGCGACTCTACAGGCAACTGTTGCAAGACTGGAAAGTCAAGTTATCAGGTATAAGTCGGCGGCGGAAATATACGAAAAATCTGAAGAAGCGTTGAAGCAGGAGAAACGGAAGCTTCAGAGAGAGgCAAGAGAAGCACAGAATCGGGCGGAAGAGCTAGAAACCTCGAATACACACCTGCTAAAACGACTAgataaacttaaaaatgccAAATCAACATTGCTTAAGGAACTTTGA
- Protein Sequence
- MSDTESRNSTTSGSLDSLADILNNLNSDDEEIETCDNNNTDNKNIKSQQQLNSKAVSDLEDEDNITEQIIRKDEEFRISSALDSSRTTENLEQVQQRSVVVTDNTNAEKFNLLGTTEDETEDAVESTRKKINKNHDADYSESSVIEQFLGHCNDDAEARLLARRQARAEARDIRMRELERQQREQEESADRQYDMLEQTTRAARTVGSRYLSSRRSSEDSLEDGGSIREIRHELKEMEEKFRKAMIANAQLDNDKASQTYQLELLKDRLEELEEEHSQLRREHRDKCREHDQLKRLAARLKDDLAVTRAELEERDRLIDEKGLVIVVEDIIPYEEDSVGDVSNNSINSITPKKALVSSENAQLLENAGEGSLDVRLSRFASEKKDLQDQISHLRLELEEEKSKKRKTSGVILNGPTSDADYEADDVQRDVVRQLADFKFRAQKAEQDVATLQATVARLESQVIRYKSAAEIYEKSEEALKQEKRKLQREAREAQNRAEELETSNTHLLKRLDKLKNAKSTLLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -