Ccup001646.1
Basic Information
- Insect
- Ctenicera cuprea
- Gene Symbol
- -
- Assembly
- GCA_958336395.1
- Location
- CATVIB010000422.1:5625-6362[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.3e-10 8.1e-08 33.5 0.0 4 38 18 51 15 54 0.92
Sequence Information
- Coding Sequence
- ATGCCGACAgtatataaaagaagaactaATAGGCGATCATGGGATGAAATTGCTTTAATAGCCGCTATTCAGGTTGTTAGGGAGGGGATGTCATGCAATATGGCTGCTTCCAATTACGAGATTCCAGAAGCAACATTAAGAAGATATGTAAAGAAAGATGCACGAGGTGAGGACCTTCCTATACATGGGGGACGGTATCACGACACTTTTGATGCAGAACAAAGTCGTGAATTGGAAAAATACATTGTAGACATAGATAGGAGAGGTTTTGGACTTACCTCTACACAACTTAGAAAGTTAGCATACGAGTTTGCCCAGAGAAAAAATATACCGCACCGTTTTAGTCACAACAAACAAATGGCTGGTAAAGATTGGCTTGAATCATTTATGAAAAAGCACAAGTTCAGTTTAAGGACACCGGAAGCCACGTCTATTACTCGGTTAATGGGCTTCAATAAAGTGGCAGtgggcaaatttttcaaaatcctccaggaagttttagaaaaatatcatttcactGCTGATAAAATCTACAACGCCGACGAAAGTGGTCTATCATCTGTCCCTAATAAGCTTCCAAAGGTATTAACGCCTACTGGAACTAGAAGGGTTGCCAAAGCTGTTTCTGCCGAAAGAGGAAAAAATACAACAGTAGTTTGTGCAGTTAATGCTGTGGGCAACTTTATCCccccatattttattttcgggCGAAAAAGGATGAAAGaggaattattgtaa
- Protein Sequence
- MPTVYKRRTNRRSWDEIALIAAIQVVREGMSCNMAASNYEIPEATLRRYVKKDARGEDLPIHGGRYHDTFDAEQSRELEKYIVDIDRRGFGLTSTQLRKLAYEFAQRKNIPHRFSHNKQMAGKDWLESFMKKHKFSLRTPEATSITRLMGFNKVAVGKFFKILQEVLEKYHFTADKIYNADESGLSSVPNKLPKVLTPTGTRRVAKAVSAERGKNTTVVCAVNAVGNFIPPYFIFGRKRMKEELL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00398849; iTF_00398851; iTF_00398857; iTF_00398827; iTF_00398829; iTF_00398822; iTF_00398823; iTF_00398808; iTF_00398846; iTF_00398830; iTF_00398832; iTF_00398833; iTF_00398834; iTF_00398835; iTF_00398836; iTF_00398837; iTF_00398838; iTF_00398839; iTF_00398840; iTF_00398841; iTF_00398842; iTF_00398843; iTF_00398831; iTF_00398845;
- 90% Identity
- iTF_00398829;
- 80% Identity
- -