Ccup035882.1
Basic Information
- Insect
- Ctenicera cuprea
- Gene Symbol
- -
- Assembly
- GCA_958336395.1
- Location
- OY284492.1:3157731-3158399[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.7e-10 7e-08 33.7 0.0 4 38 18 51 15 54 0.92
Sequence Information
- Coding Sequence
- ATGCCGAGAgtatataaaagaagaactaATAGGCGATCATGGGATGAAATTGCTTTAATAGCCGCTATTCAGGTTGTTAGGGAGGGGATGTCATGCAATATGGCTGCTTCCAATTACGAGATTCCAGAAGCAACATTAAGAAGATATGTAAAGAAAGATGCACGAGGTGAGGACCTTCCTATACATGGGGGACGGTATCACGACACTTTTGATGCAGAACAAAGTCGTGAATTGGAAAAATACATTGTAGACATAGATAGGAGAGGTTTTGGACTTACCTCTACACAACTTAGAAAGTTAGCATACGAGTTTGCCGAGAGAAACAATATACCGCACCGTTTTAGTCACAACAAACAAATGGCTGGTAAAGATTGGCTTGAATCATTTATGAAAAAGCACAAGTTCAGTTTAAGGACACCGGAAGCCACGTCTATTGCTCGGTTAATGGGCTTCAATAAAGTGGCAGtgggcaaatttttcaaaatcctccaggaagttttagaaaaatatcatttcactGCTGATAAAATCTACAACGCCGACGAAAGTGGTCTATCATCTGTCCCTAATAAGCTTCCAAAGGTATTAACGCCTACTGGAACTAGAAGGGTTGCCAAAGCTGTTTCTGCCGAAAGAggaaaaaaatacaacagtagTTTGTGCAGTTAA
- Protein Sequence
- MPRVYKRRTNRRSWDEIALIAAIQVVREGMSCNMAASNYEIPEATLRRYVKKDARGEDLPIHGGRYHDTFDAEQSRELEKYIVDIDRRGFGLTSTQLRKLAYEFAERNNIPHRFSHNKQMAGKDWLESFMKKHKFSLRTPEATSIARLMGFNKVAVGKFFKILQEVLEKYHFTADKIYNADESGLSSVPNKLPKVLTPTGTRRVAKAVSAERGKKYNSSLCS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00398848;
- 90% Identity
- iTF_00398806;
- 80% Identity
- iTF_00398818; iTF_00398833; iTF_00398834; iTF_00398835; iTF_00398836; iTF_00398837; iTF_00398838; iTF_00398839; iTF_00398840; iTF_00398841; iTF_00398842;