Ccup037671.1
Basic Information
- Insect
- Ctenicera cuprea
- Gene Symbol
- -
- Assembly
- GCA_958336395.1
- Location
- OY284492.1:30453008-30453439[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.4e-11 1e-08 36.4 0.0 3 39 16 52 14 57 0.92
Sequence Information
- Coding Sequence
- ATGCCACGAAATTACCAAAGAAAGACGGAGACCAAATACAAATTAGAAAACTTAGAAAAGGCCATTGAAGATGTCAGAAACAAAGTACTTTCACTAGGCAAAGCAGCTGCTACTTATTCTGTGCCGAAAAGTACTATACATGACCATCTCAAGAAAGAAGTTATAAGGCAACCAAAAAGTGGAAGAAAAGCTATTTTTTCCAAAGAGCAAGAAAATGAATTGGAAGAACATATCAACAAATGCAGTAAACTTTTTTATGGTTTGACCATAGAGATGTTGCGAAAAATAGCTTTCAAATGTGCTGAAGTGAATAATTTGAAGCATAATTTTGACAAAACATCCCAAATGGCAGGAAAAGATTGGTtttacggatttaaaaaaaagacaccCAAACATTTCTCTACGAAAACCAGAGTCTACTTCTATCAATAG
- Protein Sequence
- MPRNYQRKTETKYKLENLEKAIEDVRNKVLSLGKAAATYSVPKSTIHDHLKKEVIRQPKSGRKAIFSKEQENELEEHINKCSKLFYGLTIEMLRKIAFKCAEVNNLKHNFDKTSQMAGKDWFYGFKKKTPKHFSTKTRVYFYQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01157633; iTF_01561948; iTF_00819986; iTF_01359646;
- 90% Identity
- -
- 80% Identity
- -