Carm025567.1
Basic Information
- Insect
- Cryptus armator
- Gene Symbol
- Prdm15
- Assembly
- GCA_963971235.1
- Location
- OZ020235.1:20040405-20045291[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.1 1.7e+02 4.0 0.0 2 23 244 265 243 265 0.94 2 14 0.00032 0.048 15.2 2.4 3 23 274 295 273 295 0.96 3 14 1.9e-05 0.0027 19.1 1.8 2 23 458 479 457 479 0.97 4 14 0.00067 0.099 14.2 0.6 1 20 483 502 483 503 0.96 5 14 2.9e-05 0.0043 18.5 3.1 1 23 513 535 513 535 0.98 6 14 3.5 5.2e+02 2.5 1.0 2 20 540 558 540 560 0.92 7 14 2.3e-05 0.0034 18.8 5.9 1 23 564 586 564 586 0.97 8 14 1.1e-05 0.0016 19.8 0.8 3 23 609 629 607 629 0.97 9 14 0.24 36 6.1 2.3 1 23 634 656 634 656 0.96 10 14 0.0011 0.17 13.5 0.1 2 23 662 683 661 683 0.95 11 14 0.0015 0.23 13.0 5.5 1 23 688 711 688 711 0.95 12 14 0.00036 0.053 15.0 4.2 1 23 717 739 717 739 0.97 13 14 0.009 1.3 10.6 9.2 1 23 745 768 745 768 0.96 14 14 0.052 7.6 8.2 4.7 1 23 773 796 773 796 0.95
Sequence Information
- Coding Sequence
- ATGATGAATAAACCGGCTACTGGCGACACTGAACAGAATAAGGAAAGCGCGAGCGAAACTTACTTGTCAGCTTGCAGCATTTGCAATCAACAACACGATACCAACAGCTGTTCATTCTTTCTTGCCTTTCGTCATgTCAAGGATGAGCCTCTTGTGTCGAAAGCGAGACAAACGCTTCCCAAAAATTTGGAAATCACAAAAATGGCTGACGATTCATTTACCGTCGTTGCAAAACAAGATTTTCCGCAGGGAACGACCTTTGGACCTTTCGAAGCCAAACGCGACTGGGCAATGAATCCTATGACCGATTTTCCCATAAAAGTCTTTGGCGATGGAAAAGTCGATACTTACCACTTGGATTACTCGGACGAAGAAACCTCCAACTGGATGTGTTTCGTGTCCCCAGCATCCAACGCGAGAGAACAAAATCTCATCTGTTATCAGCTGGAGGGGGAAATATTTTACACAGCTATGCGCTTAATTCCTGCGGGCGAAGAGCTCAGAGTTTGGTACGCACCTTCTTATGCTCTAAAAATGAAAATGCCGCTCTACAACACggaattcgcgactatcggctCCGCGTTTCGCGTTTCGGAGGCCGAGGAATCATCGACGCCGGACGAGAACGCGAAAATCGATGGAGCAGAACTCTCGAGTAAAACTATGCGGGAAATAACGGAACGCTTGCCGGCCGAACAGCTCGGAACTCAAAAAGACGAAACTAACTGGAACTGCAAAATATGCTCGATCGTTATAGCTTCGGTAAATGCGTACGCAAAACACTTGATGGAACACTATAAACCGTTCTTGGGTGTGTTCTGCGATATTTGCAACAAAAAGTTTTACAGGCTTTCGGTTTTGCAAAAACACAAACGTCTGAAGCACCCGGAGGGTTTACCGACGAGCGACGTTGTGGGAATCCCGACCTCGGAAAATCAACAGCAACAGAATGCACAGACGATACTCATGAATATGAGCGATTCGGAGAACCAAACGTCGGAAGCAATGAAAGATATTCTAGAAAAGTTTAAAGCCGGCAAAGCAATAACGGAGAGTACGTTATTACTTTCGCCTATGGAAACCGAGAAAGAGACTCAAAGCGAATTGCCTCTACTGGACACGAATTCCATAAACGTTAACGATCTTTTACAAAACAACGGTACTCTCTCAATGGAAAATTCATCGCTTAAATTGATTCTGGAGAATCAATGTTTGAATATGAATCTCGGACTCGGAACAATGACCGATTCAATCCTTTCGGAGAATATAACAGGCGTCGATTCGGTCAAATTCAACGTTGAAGAATTGGCTTCCGAATTGCTCGACATAACTCCCGACGTTGAGAATATAAATCGTCGCGTCGACAATCTCGAGTGCGATATATGCgagaaaaagttcgaaaaagcGGATTATCTTCATCGGCACTTGAGAAAACATACCGGTGAATTTACCTGTTCGGTCTGTTCGAACGTGTTCGCGAGAAAGGAGAACTTAGTATCGCATATTTGTCCATCGCAGCAACTCGAACGGCATAATTACGAGTGTCTTTATTGTCAGAAGCGTTTCGTAATGAAGAAATATCTGAAGCGTCATATGGTGAAGCACACGGGATGGAATACGTGCAAATGGTGTCGAAGTTTATTCGATACGCGGCCGGAACTCGAGGCTCACAAATGCCAAGCGCCGAAGCACGTTTGCTCCCAATGCGGCAAACGTTTTGTTCATCGAGCGCATCTCAATCGTCACGCGAAATCTCACGCGAACCCTAAACCAGCAGCcgcgaagagaaaaagaaaatctacACTGGTCGACAAACCGGTGATATGCGAAAAGTGCGGCGACGTCTTCAAAAATCCTCATAACTTGAACCAACACTTGCGTTCtcacgGGGAAAAGCAATTCGAATGCGACGTGTGTCACAGTAGATTTCACAGGATTGGCGTCCTAAAACAGCATAAAGCGATACATCAAACAGTACAAATACCTTGTCAAGTGTGCGGAAAAAAGTTGAAGAGTAAAAAAGCCCTAAGCGTTCACGTTCTTCTGCACgggaataaaaaattcgattgcgAAAAGTGCGATAAAAGTTTCTTTCAAAGATGCAATTATCTCAAGCATTACAAACAAGTTCACAGCGACAAAATAACGCACAAGTGTCCTCACTGCCCGACGCAATTCACGAACGAACAGAGTTTCAATAAACACGTGGAGAGTCACGTGAAACCGGCGCAACATTCTTGTTCGTCGTGCCATAAAGTTTTCCATCGAGAATACCAGCTGAAGCGTCACTTTCAAACGAATCACAGCGGTATAATATTTCGTTGTCCGTATTGCAAAATGACTGCGAGATATCGTCACAGTATGAGACGTCATTTCGAACGTCAGCACAAGAGTCTCAGCGACGATTGGGACAAACCCGGCTTTGTCAACGATCTCATTGAAAAAACATCGCCGGTGTTAATCGGGGAACAAGTTATCGCGAAGGATCGTGATAACACCGTGATGCAAGTGGCTTACGGGGACGTTAACGCTGCGGAATTCGAAGCTCAGGAAAATGATGGAGAATTAATATTGTCGGTATCTGGATTGGGAAATCAATTTACTGATGAGGCGAAAGTTCCGGCGCGAAGCGGCGATGATTTAGCGCAAAGTTCGCTGAACGGTCAAGAGATTTTACTCCAAGTCTCGGAGATCTGCCAATCGGAATCCACGATAGCGAGCAACGAATTGCCGTCGAACGAAGTTCCGCAACTTAGTATCAGCGACTCGGACACTCATCTCGCGGAATCGGTCCTCGGAAATGCTTATATATTCGGCGAGGATGGAGGGGATATCATGTTCTACGTTCTCGATAATACTCCCGTTATAACTGATTACTGA
- Protein Sequence
- MMNKPATGDTEQNKESASETYLSACSICNQQHDTNSCSFFLAFRHVKDEPLVSKARQTLPKNLEITKMADDSFTVVAKQDFPQGTTFGPFEAKRDWAMNPMTDFPIKVFGDGKVDTYHLDYSDEETSNWMCFVSPASNAREQNLICYQLEGEIFYTAMRLIPAGEELRVWYAPSYALKMKMPLYNTEFATIGSAFRVSEAEESSTPDENAKIDGAELSSKTMREITERLPAEQLGTQKDETNWNCKICSIVIASVNAYAKHLMEHYKPFLGVFCDICNKKFYRLSVLQKHKRLKHPEGLPTSDVVGIPTSENQQQQNAQTILMNMSDSENQTSEAMKDILEKFKAGKAITESTLLLSPMETEKETQSELPLLDTNSINVNDLLQNNGTLSMENSSLKLILENQCLNMNLGLGTMTDSILSENITGVDSVKFNVEELASELLDITPDVENINRRVDNLECDICEKKFEKADYLHRHLRKHTGEFTCSVCSNVFARKENLVSHICPSQQLERHNYECLYCQKRFVMKKYLKRHMVKHTGWNTCKWCRSLFDTRPELEAHKCQAPKHVCSQCGKRFVHRAHLNRHAKSHANPKPAAAKRKRKSTLVDKPVICEKCGDVFKNPHNLNQHLRSHGEKQFECDVCHSRFHRIGVLKQHKAIHQTVQIPCQVCGKKLKSKKALSVHVLLHGNKKFDCEKCDKSFFQRCNYLKHYKQVHSDKITHKCPHCPTQFTNEQSFNKHVESHVKPAQHSCSSCHKVFHREYQLKRHFQTNHSGIIFRCPYCKMTARYRHSMRRHFERQHKSLSDDWDKPGFVNDLIEKTSPVLIGEQVIAKDRDNTVMQVAYGDVNAAEFEAQENDGELILSVSGLGNQFTDEAKVPARSGDDLAQSSLNGQEILLQVSEICQSESTIASNELPSNEVPQLSISDSDTHLAESVLGNAYIFGEDGGDIMFYVLDNTPVITDY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00841332;
- 90% Identity
- iTF_00398338; iTF_00841332;
- 80% Identity
- -