Carm019882.1
Basic Information
- Insect
- Cryptus armator
- Gene Symbol
- -
- Assembly
- GCA_963971235.1
- Location
- OZ020232.1:26292631-26298881[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.12 18 7.0 1.6 1 23 301 323 301 323 0.93 2 12 0.00042 0.062 14.8 3.8 1 23 328 352 328 352 0.93 3 12 0.0032 0.48 12.0 0.8 1 23 476 499 476 499 0.96 4 12 0.00095 0.14 13.7 0.9 1 23 505 527 505 527 0.97 5 12 0.0022 0.32 12.6 0.1 1 23 537 560 537 560 0.90 6 12 2.9e-07 4.2e-05 24.8 3.6 1 23 565 587 565 587 0.98 7 12 3.5e-05 0.0051 18.2 0.3 1 23 593 615 593 615 0.98 8 12 4.8e-05 0.0072 17.8 1.9 1 23 621 643 621 643 0.98 9 12 1.2e-08 1.8e-06 29.1 0.5 1 23 649 671 649 671 0.98 10 12 4.5e-06 0.00066 21.0 5.0 1 23 677 699 677 699 0.98 11 12 1.3e-05 0.002 19.5 1.6 1 23 733 755 733 755 0.98 12 12 3.1e-07 4.5e-05 24.7 1.5 1 23 761 783 761 783 0.98
Sequence Information
- Coding Sequence
- ATGGCGGAGGTATCGCTCTATGATTCGGCAATTTGTCGATTATGTGCGGAGGACAATGGTAACGGTGAATTGTTGTACGCGATTGACGGCGATGAACAAGATTTAAGCTCTATGGTGAATCGCTACTTGCCAATAAAGATTCGAGACGATGGAAAATTACCACGAACCATATGTCCCGGTTGCAACATACAGCTGGAGGCGACGGTGCAATTTTTCGAATTGCTCGTCGATGGACAGCGTAAAATTCGCGAAATGTGGAAGCAACAGGtcgagatacaaaaaaaaacggaacgcgAACGCTTGAGAGTGGAACGAGAGAATACAGAACTCTCCATAGAAACTCCGGAACTCGACAATTTTTATAGTTCCAATGGTGACGAACAATTTTCTCAGCAGATCATCATCAAGATTTTGCCGGATGGTTCGATGTACGCCGCCGAACACGATATGAGTTTGCAAATGGAAGGACTCAACAAACCTCGAAGAAAAAGAGGCCGACCGCCGAAAAGTCTCGCCGAACTCGATAACAagTTGACGGAAGATGCTACGGACGGGGCGAGtcaagaggaagaagaaaagtTGGATGACGACGCGGACGAAGTCGATGGGGACGGCAGACGACGCAGAAAACGAAAAGTTCCTAAGAGATTCTCGGAGGCGGTGCAGGGAAAAGAATTGGAAAGAATATTCAAAGAAGAAGGCgttatcgacgacgacgacgatggagcGGACAATACGGTCGATGATCCCGAGGAACGTGTGAAGGTTCCGACTCCCGATGGTCACGAAGAAATAATCGGTCACTTGGAATCCGAAGAGGGCAAAGATTTGGGTGAATTGGTAATCGTGAATCGCGCGAGAGGTCGCGGACGGCCCAAATTACGCAGAAGAAAGAATAAATTCACCTGCAACTTGTGTGGTCGCGGATTTCTTCAGCGGAGCAGATATATTATGCATAGGAGTTTTCACAAAGGAATAAAGTATCAGTGTTCGGAGTGCAAAAAGACATTTACGAATAAAGAAAATTGCGCATTGCATCAAAAGACAACGGGTCACAGCGGAATAATCGAAGGTATCGAATCCGAGGAGACAAGTCCTCAGGAGATCGAGCCGAGTGCCGAGGAGTCGGAAAAATCGACTCCAGAAAAATCGATTCCCGAGAAAAGTTCGactttcgaaaaatcttcgGCCGATGATTCGAGTCTTGAAAAATTGATTCCCGAAAATCAAAGTCCCGAGACATCGAACGGCGAAAATCCGTGTCTCGAGAAAACGAGTCCAGCGAATGAAGAGGAAAAATCCAAAGACGCGGAAGACGAGAAGATCGAAGATAGGAAAGACGAAGGAAGCGGCAACGAGCAAACGATCGCGAGATCGAGTTCACCGGAAACTCAATTACCTCAGGTTGACTATACGACAAAACCATTCGATTGCACGCGATGCAAAGAATCTTACGGTACTAAGTTACTGTTTGAACGCCACTTGCGAATTGTTCACAACGGTGAGAAACCGTTCGCTTGCACTCTATGCACCCGAACTTACGCTTATCATGCGGCATTAAAGGAACACCTGTTGACGCACGAgcGAAGCAACAAATCCGAAAAGGGTTATCCTTGCGATATATGCGGCAAAGTATTGAATCATCCGAGTTCCGTGATATATCACAAGGAAGCTGAACACAACGGTCGTCGTTTCGTTTGCAACAAATGCGGAAAAAGTTTTAAACACAAACAACTTTTGCAACGCCATCAGCTCGTTCACTCGGACGATCGTCCCTACGTTTGCGGCGCTTGCAACGCGAGTTTCAAGACTAAAGCTAATCTCATAAATCATCAATTCACTCACACCGGCGAGAAGAAATATTCTTGCGAACTTTGCGGTCAACAATTCGCTCACAAGACAAGTCTTACGTTGCACTATAGATGGCACACGGGACACAAACCCTATTCTTGCGAGGTGTGCAACAAGAGTTTTTCACAGAACGGTAATCTTCAGGAACACATGAGAATTCATACGGGTGAAAAGCCGTACAGTTGCGATCATTGCGGGCGAAAATTCACGACATCATCGCAGTTTAAACTTCACGTAAAGCGTCACACGGGCGAACGTCCGTGGAAATGTGAATTTTGCGCGAAAACATTTCTTCACAAAGACACGTGGAAGTGTCACGTACGACGGCACAAAGGTGAACGGCCTTTTCAATGCGCTCATTGCAATCGCGGATTCACGGAGCAATGGGCCCTCAAAAAACATCTTCGACTGCACACTGGTGAAAAACCATATTCTTGCGATGTTTGCGGTAAGGCTTTTGCCGATTGTTCGAATCTTACGAAACACAAAAAGGTACATCGAGAAAACAAAGTTTTGGCTATTAACGATTTGTCGAAAGCCGCTGCCGGTGGTGAATTGTGGCAAATTTTACCGGCATCCGAAGACGGCGATGAACATTCTCTGGGCGAACATGTGACCCAAGTATTCGCTGGCGAGGAAACATCCGAAGACGGAATACCGCAGATTATTTATGTCTCTTATCAAGATCCGGATGATCCAAATCAGTCGCGTACACTGCATTTCGtCGACGTCGGTGTGATGGAGGATAAAGAAGGAATAGCAACAGTGGCGTCAGGTCAGTCTTTGCCAACGCTGGAAGTTGCCGATTCGGTCGAAGATATCGTCGGTGCGAAACGAGTAATTCCAGCCGTTCAGCAAGAAGATTCCACGAGAGAAAATGACATAGTATTCGATGATTCGAATCTTCAATTACAGATTACTGACGAAGAAGGAAATCCCATTCCACTGTCGATACAAGACGCCCGGCAATTGTTATCCGATGGAAGATTCGTTAGTCAGCTAAACGACGGACAAGCGATCAGGATATCCGACGAATTAGCTCAGCAGTTGAATCTTCAAGTTAATCATAACGTTGAAATGGATAACATAGAAACCACGAGCGCCGAGCCATCGACGGCGGAAACTGATGCTGAGGCGATAGTCAAAGTTTTGGAGGACGAAGATACGGATGCGACAGCAGTAGCGGCGGTGAATCAGATGGCAGGCGAAGCCGAGATAGACGACGGCGCGCAAACAATTGAGTTCACCACTCAAGACGGCCAAAAAGTTCGTCTCGTTACATCGTACCACGTCGATCCGATGCAACTCGCTTCAGAGTACCTGAGTATAGTTTAG
- Protein Sequence
- MAEVSLYDSAICRLCAEDNGNGELLYAIDGDEQDLSSMVNRYLPIKIRDDGKLPRTICPGCNIQLEATVQFFELLVDGQRKIREMWKQQVEIQKKTERERLRVERENTELSIETPELDNFYSSNGDEQFSQQIIIKILPDGSMYAAEHDMSLQMEGLNKPRRKRGRPPKSLAELDNKLTEDATDGASQEEEEKLDDDADEVDGDGRRRRKRKVPKRFSEAVQGKELERIFKEEGVIDDDDDGADNTVDDPEERVKVPTPDGHEEIIGHLESEEGKDLGELVIVNRARGRGRPKLRRRKNKFTCNLCGRGFLQRSRYIMHRSFHKGIKYQCSECKKTFTNKENCALHQKTTGHSGIIEGIESEETSPQEIEPSAEESEKSTPEKSIPEKSSTFEKSSADDSSLEKLIPENQSPETSNGENPCLEKTSPANEEEKSKDAEDEKIEDRKDEGSGNEQTIARSSSPETQLPQVDYTTKPFDCTRCKESYGTKLLFERHLRIVHNGEKPFACTLCTRTYAYHAALKEHLLTHERSNKSEKGYPCDICGKVLNHPSSVIYHKEAEHNGRRFVCNKCGKSFKHKQLLQRHQLVHSDDRPYVCGACNASFKTKANLINHQFTHTGEKKYSCELCGQQFAHKTSLTLHYRWHTGHKPYSCEVCNKSFSQNGNLQEHMRIHTGEKPYSCDHCGRKFTTSSQFKLHVKRHTGERPWKCEFCAKTFLHKDTWKCHVRRHKGERPFQCAHCNRGFTEQWALKKHLRLHTGEKPYSCDVCGKAFADCSNLTKHKKVHRENKVLAINDLSKAAAGGELWQILPASEDGDEHSLGEHVTQVFAGEETSEDGIPQIIYVSYQDPDDPNQSRTLHFVDVGVMEDKEGIATVASGQSLPTLEVADSVEDIVGAKRVIPAVQQEDSTRENDIVFDDSNLQLQITDEEGNPIPLSIQDARQLLSDGRFVSQLNDGQAIRISDELAQQLNLQVNHNVEMDNIETTSAEPSTAETDAEAIVKVLEDEDTDATAVAAVNQMAGEAEIDDGAQTIEFTTQDGQKVRLVTSYHVDPMQLASEYLSIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00398288; iTF_00841298; iTF_00058887; iTF_00905576; iTF_01364845; iTF_00058128; iTF_00721437; iTF_00059616;
- 90% Identity
- iTF_00398288; iTF_00841298;
- 80% Identity
- -