Csec002347.1
Basic Information
- Insect
- Cryptotermes secundus
- Gene Symbol
- -
- Assembly
- GCA_002891405.2
- Location
- NW:414732-429409[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.052 40 3.9 0.1 22 43 264 285 260 297 0.78 2 6 0.79 6.1e+02 0.1 0.2 25 43 295 313 284 316 0.77 3 6 0.00028 0.21 11.2 0.1 19 48 345 374 337 378 0.82 4 6 0.0023 1.8 8.3 0.0 21 45 375 399 371 408 0.86 5 6 0.66 5.1e+02 0.4 0.3 21 43 403 425 398 429 0.74 6 6 0.0017 1.4 8.6 0.4 19 45 429 455 419 459 0.76
Sequence Information
- Coding Sequence
- ATGGATGTAATCAAAATCGAGCAGGACAATATTTGTGATACTAATGGAATATGTCTaaacaaaaattgtaattttgttggtATTCAACAAGGAGCTGAATCAGATGTGAAGACAGGTTTTCAGTTAAATGCTGCAAGTTGGGGTGATTTAACTGtagtgaagagtgaagtgcagcaTATCACTGTGAAAGCAGAAAGTGTATTACAAATGAAGGAAGAAATTCAGCCAACTGAAGAATGTCATTTAAGGGTGAATGACGATATTCACTGTGTTTTAACAAAACAGAAAGATAAACCAGTTGTAAAGAATGGAGCTTGTCTCATTAGTCCACAAGGGAAAGGACCTTCACATCCAGCCAGAGAGGAGcaCAGTATTGGTATGTTCAAAGTGGAACCTGATTCGTTTGACAGCACTTCCCCTTTATATTCTCCTAATGATGATCCATTAATTGatgtaaaacaagaaaaatgtgaTGTTACAATAATGGAAAATATGATGAAGGTTGAGTTTGCGCCTGTTAAAAATGAGATGAAGGATGAATTTTGGGCTCTTAAGGAGGAGTTCAAGGATGAAATAACAGTAGAGGAGCATGAAATGTGTCTGCAGAACATGGGACTCTTGGCCAATGAAGGTGAACATACGGCTGGCACCATAGTGGAAGTCATAAATGGAAAGCGAAAGATTGATGTTCTTTTGGAGCAAAGAGTGAATTGTTATAAATGCCCAGAATGTAGTGAACAGTTTTCTCGTAGAGTATGTCTTTCCAGACATATAAAAACTCATATCGACGAGGGGCCTTACAAGTGTGATATATGCCATAAAGGATTTGCTCAGGCTATGAATCTAGGTGTGCACCGCCGTGCCCATGCAGAAAAGAGGTCCTACAACTGCAAAATATGCAATAAGGGATTCATAAGAAGTGGCAATCTCGCAAAACACTGTTGTGCCCACACGGGAGAAGAATCATATGTTTGTGAACTGTGTGGCAAGGGATTTACAAATTGTGGAGAACTGTTGCGGCACCGGCGTACCCATGCAGGTGAGAATCCATACACCTGTGACATTTGTAAAAACGTATTTTCAAGACATGCAAATCTTACAATACACATGCGGATTCATACCGGAGAAAAACCATACATATGTGATATATGTAGTAAGGGTTTCAGGAAAAGTGGAGATCTTGCTAGACATCGTCGGACCCATACAGGAGAGAAGCCATATAtatgtgatatatgtaataaaggCTTCGTATGTAATGTTGATCTAACAAGGCACAGACGTACACATACTGGTGAGAAGCCGTATGCCTGTGGAATATGTAAAAAGGCGCATTCGCGTCAATCAAATCTAGTACGACATATGCGCATACATATTCCGGAAAAGAccataaatttgtga
- Protein Sequence
- MDVIKIEQDNICDTNGICLNKNCNFVGIQQGAESDVKTGFQLNAASWGDLTVVKSEVQHITVKAESVLQMKEEIQPTEECHLRVNDDIHCVLTKQKDKPVVKNGACLISPQGKGPSHPAREEHSIGMFKVEPDSFDSTSPLYSPNDDPLIDVKQEKCDVTIMENMMKVEFAPVKNEMKDEFWALKEEFKDEITVEEHEMCLQNMGLLANEGEHTAGTIVEVINGKRKIDVLLEQRVNCYKCPECSEQFSRRVCLSRHIKTHIDEGPYKCDICHKGFAQAMNLGVHRRAHAEKRSYNCKICNKGFIRSGNLAKHCCAHTGEESYVCELCGKGFTNCGELLRHRRTHAGENPYTCDICKNVFSRHANLTIHMRIHTGEKPYICDICSKGFRKSGDLARHRRTHTGEKPYICDICNKGFVCNVDLTRHRRTHTGEKPYACGICKKAHSRQSNLVRHMRIHIPEKTINL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00396634;
- 90% Identity
- iTF_00396634;
- 80% Identity
- iTF_00396634;