Csec009326.1
Basic Information
- Insect
- Cryptotermes secundus
- Gene Symbol
- -
- Assembly
- GCA_002891405.2
- Location
- NW:116847-122391[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.38 2.9e+02 1.2 0.0 29 44 185 200 182 211 0.86 2 6 0.0015 1.1 8.9 0.1 20 49 229 258 220 262 0.86 3 6 0.0056 4.4 7.0 0.1 22 43 259 280 254 290 0.87 4 6 1.8 1.4e+03 -1.0 0.0 26 43 291 308 286 313 0.83 5 6 0.0022 1.7 8.3 0.1 21 44 314 337 306 341 0.91 6 6 0.11 86 2.9 0.2 22 46 343 367 337 369 0.87
Sequence Information
- Coding Sequence
- ATGAGTGTAATTAAAGTGGAAGTAGAATCAGATAGTAAGGTACGTGAGCTTGGTGTTAAGATAGAACAGGCTGAAGATTATTCTTCAGTGACGTGTGAAGATATAAAAAGCGGTATTGCTTCAGTTCAGAGTGTGGATAGAATGAAAGAGGAGCCTGATTTGGGATCCATAGTATCACCTGATGAAGATCAGTTTGATGATGCAAAAGAGGAGCAGCAGCTGGCACCATTTGCTTTTATTGCAGTAGAAAGTGATATTGCAGAACAGTCTTGGGATGGGACATGGATCAAGGAAGAGCCAGTAGATGAAAAGAGTGAAGAACCGCGAGAGTGGCGTCTTAATGGGGAACAACACCTGAGCAAACAAGAACGTGACGCTGATACCAGTGTCTGTGTGGAAAGTGGTTATGCAAAGGATATTAATTCTGAAACACTTGCCTACCTTCAGAACAAGATATATAAATGTGATGATTGTCTTGAAGAATTTTCCAACGAAGATGACCTAAAACAACATTCCCTCACTCACTCGGGTGGAAAGCTTCACAAATATGATATATGTAAGATAGATTTATCTCAGTCTGAAAATCTGAAGAGCCACTACCAACCTCACAGTGAGGAGCAACCTGATATCTGTGGTAAATTCTCCACTCAGAGCGATGCATCGAGTGAACACTGTGAGTCCTACCAGGTAGAGAAACCTTACAAATGTGATTTATGTGAAAAGAAGTTTGCGCTCAGTGTAAATCTAAAGCGTCACTATCGCGTGCATAATGTAGACAGGCCACATAAATGTGATGTTTGtaatgcagtgttttctgtgagtggCGCTCTCCGGGTTCACTCTCTGAGTCATTTGGGAGTAAAGACACACAAATGTGACATATGTTTTAGAGAATTTACTAGAAATGAAAGCCTTAAAAAGCATTATATCACACACACAGGAGAGAAGCCATACAAGTGTAACATTTGTGGCAAAGAATTCTCGCAGAATGCAAATTTACAAAGACATCATCGAACCCATAGTGGTGATAGACCATATAAATGCGATTTGTGCCCAAGGACATTTGCCAGAAGTGAACACTTAAAATCACACATTGAAATCCATATGTGA
- Protein Sequence
- MSVIKVEVESDSKVRELGVKIEQAEDYSSVTCEDIKSGIASVQSVDRMKEEPDLGSIVSPDEDQFDDAKEEQQLAPFAFIAVESDIAEQSWDGTWIKEEPVDEKSEEPREWRLNGEQHLSKQERDADTSVCVESGYAKDINSETLAYLQNKIYKCDDCLEEFSNEDDLKQHSLTHSGGKLHKYDICKIDLSQSENLKSHYQPHSEEQPDICGKFSTQSDASSEHCESYQVEKPYKCDLCEKKFALSVNLKRHYRVHNVDRPHKCDVCNAVFSVSGALRVHSLSHLGVKTHKCDICFREFTRNESLKKHYITHTGEKPYKCNICGKEFSQNANLQRHHRTHSGDRPYKCDLCPRTFARSEHLKSHIEIHM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00396695;
- 90% Identity
- iTF_00396695;
- 80% Identity
- iTF_00396695;