Csec006592.1
Basic Information
- Insect
- Cryptotermes secundus
- Gene Symbol
- -
- Assembly
- GCA_002891405.2
- Location
- NW:4979-8519[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 8 6.2e+03 -3.1 0.1 22 34 110 122 101 134 0.69 2 7 0.016 13 5.5 0.1 23 46 167 190 161 196 0.85 3 7 0.055 43 3.8 0.0 21 51 193 223 189 226 0.86 4 7 0.54 4.2e+02 0.7 0.0 21 43 221 243 218 253 0.84 5 7 0.78 6.1e+02 0.2 0.0 21 47 249 275 244 285 0.79 6 7 0.00055 0.43 10.3 0.0 17 43 301 327 296 332 0.90 7 7 0.014 11 5.7 0.0 22 46 335 359 330 367 0.87
Sequence Information
- Coding Sequence
- ATGGCTGAATATAATGTAAAAGCAGATACAGAGTATTCTAATTCGTCCAATACGTCATCGACGTCTGAAGCCATTTCCAGAAACGTTCAAAATGTTGGCCCATTTACTTTCGTTGAAGTAAAGTGTGAAATTGAgGAAAATGAAGAATACTGTTCAGCTGCTAATTGGGAGCATTTCCTTTGTCGTTCCTCAGTGAAAGGAAACAAGGATGAACATGATGATTGCACTGATGAAAAGAATCAAAGGATTAACGAAACCCACGAAGTTCACATGAACATAGCGCCTGTTAAGGGATCTGTTAGGTCATGTTCATTTACAAATTATGGGGACAGGCCATATGTGTGTGGTGTTTGCGGCAAAGGTTTTGGTTATGCTTGCAGTCTCAGGGTGCACAACAAGATACACACCGGAGAGAAACTTCACCTGTGTCAACTTTGTGGGAAAAGATTCGTTACAAGTAGTGAGCTCAAGAAACATGGGCTTTCTCATACAGGAGTTAAGCCACATGTATGTAAAATGTGTGGAAAGGGATACATTCAATGTGGAGATTTACGAAGGCACTTACGGACTCATACAGGTGAAAAACCTTTCTCATGTACATATTGTGGTAAGGGGTTTACAGATAATTCAAATTTAAAGCAACATTTGGTCATACATACAGGAGAGAAGCCATACAAATGTGATGAGTGTGGGAAATGTTTCGGCAATTCCGGAAATCTTAAAACTCATAATCTGACACACACTGGTGAAAAACCTCACAAATGTAAAAGTTGTGGCATTGGCTTTAGTACCCGTGGCAATTTAAAAGCCCATTTACTGACACATTCTGAAAAGAAGCCATTCGTGTGTGGCGTGTGTGGGGAAGGGTTTTGCAGAAATTCTCAGTTGAAAACGCACACATCTAGACATATTGGTGAGAAACCTTATACATGTGATATCTGTAGTAAATGTTTTTTTACAAAGGGCAATTTGAGAACACATTATATAACTCATACTGGTCAGCAACACCCATTTACATGTTCTGTTTGTAATAAAGGATTCACGTATAGAGGAAATTTGAAGCAGCATATTGAGACACATTCAGCAGAAAAGCAGCAGATCTGTAATGAATGTGGTAAAAGTTTCAGTAGTAGTACATGGTTCAAGAAACATATTCTGTCCCACTCTGCAAAGAACAACATTGCCAACAGTGCATGA
- Protein Sequence
- MAEYNVKADTEYSNSSNTSSTSEAISRNVQNVGPFTFVEVKCEIEENEEYCSAANWEHFLCRSSVKGNKDEHDDCTDEKNQRINETHEVHMNIAPVKGSVRSCSFTNYGDRPYVCGVCGKGFGYACSLRVHNKIHTGEKLHLCQLCGKRFVTSSELKKHGLSHTGVKPHVCKMCGKGYIQCGDLRRHLRTHTGEKPFSCTYCGKGFTDNSNLKQHLVIHTGEKPYKCDECGKCFGNSGNLKTHNLTHTGEKPHKCKSCGIGFSTRGNLKAHLLTHSEKKPFVCGVCGEGFCRNSQLKTHTSRHIGEKPYTCDICSKCFFTKGNLRTHYITHTGQQHPFTCSVCNKGFTYRGNLKQHIETHSAEKQQICNECGKSFSSSTWFKKHILSHSAKNNIANSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00396528;
- 90% Identity
- iTF_00396528;
- 80% Identity
- iTF_00396528;