Csec004348.1
Basic Information
- Insect
- Cryptotermes secundus
- Gene Symbol
- -
- Assembly
- GCA_002891405.2
- Location
- NW:256446-524297[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 4 3.1e+03 -2.1 0.0 26 43 110 127 105 144 0.70 2 9 6 4.7e+03 -2.7 0.0 18 30 156 168 148 184 0.66 3 9 0.0015 1.1 8.9 0.2 21 46 186 211 179 214 0.90 4 9 5.6e-05 0.043 13.4 0.2 21 45 214 238 210 241 0.92 5 9 0.023 18 5.0 0.4 21 46 242 267 238 273 0.88 6 9 0.12 90 2.8 0.1 21 46 270 295 266 297 0.89 7 9 0.0067 5.2 6.8 0.1 21 45 298 322 294 326 0.91 8 9 0.017 13 5.5 0.2 21 46 326 351 322 357 0.87 9 9 0.14 1.1e+02 2.5 0.3 21 49 354 386 350 390 0.73
Sequence Information
- Coding Sequence
- ATGTGCGTGGAAGTACGAAATACACATCGCCGTAGAAAACAGCACTCAAGGAAGGCCACTACAGAgcaagagaagaagaagaataacaaGAGAAGAATGGCAAGTGAAGAAGAGCGCCTTGCGAGACTGCGAATGACGTTGCATTCCTTAGCAACTCGAGTCCCAAAAATAATTCTGACACGAGTTGACTGGACATTTCCTGCTTTGAAGAATCAGGCTagtgttaaattaaattcagcAGACATTGAAGCAATACACGTCAATAAGGATTTTAATGTCAAGGAACTTCTTCTTCGTGAATTGTTAAACACAGAAGAAGACTTCAATTCTTGCAGGATATGTAAGAAGTCATTGTCTCGTGAGACTAACTTGCTGGGACATTCAAGTGGAAGTAGCAGAGAAACAACATCTCTTTGTGAAATGTGTGTCACATCATTAACTCCTAAGCATAGTGCAGTACGACGATCAAGTGGTCTCGAAGAGCCTTTTTCTTGCAAAGACTGCAAGAAGTTAAACAGTCACGCTAATTTGTACAACCATACCAAAGTGCATACTGCAGAACGGCCATTTTCTTGCGAAGTGTGTACGAAAATGTTCGCACGCCGCTCTAACCTAAACAGACATTTAAGAATTCACAATGGAGAACGGCCTTTTTCGtgcaaagtgtgtaagaaaGCTTTTGCACAGAGCTCTAACCTAAACAGGCATCTCAGGGCACACACTGGAGAGCGACCGTTCTCGTGCCATGTGTGTAAGAAACGGTTCTCTCAGCTCTATAACCTAAACACACATCTCAGAATACACAGTGGAGAAAGACCCTTTTATTGCGAAGTGTGTGAGAAAACATTCACTTATAGCTCTATCCTGAAGAAACATCTGAGGGTGCACAATGGAGAACGCCCTTTTTCGTGCAAAGTGTGCAAGAAAACTTTCGCAGAGAGTTCTACCTTAAACAGGCATCTCAGAGCGCACAGTGGAGAGCGACCGTTCTCGTGCGATGTGTGCAAGAATCTGTTCACTCAGCTCCATCACCTAAAAATACATCTCAGGATACACAGTGGAGAAAGACCCTTTTCTTGCGAATTGTGTAAGAAAACTTTCGCTAATAGAGATGTCCTGAAGAAACATCTGAGAGTGCACAGTGGAGAACGGCATTTTACGTGTAAATTGTGCAAGAAAATGTTCACTCGCcgcttccttctgaatcagcaTCTCAAATCACACATTTCAGAACAAGCATGTTCGTGA
- Protein Sequence
- MCVEVRNTHRRRKQHSRKATTEQEKKKNNKRRMASEEERLARLRMTLHSLATRVPKIILTRVDWTFPALKNQASVKLNSADIEAIHVNKDFNVKELLLRELLNTEEDFNSCRICKKSLSRETNLLGHSSGSSRETTSLCEMCVTSLTPKHSAVRRSSGLEEPFSCKDCKKLNSHANLYNHTKVHTAERPFSCEVCTKMFARRSNLNRHLRIHNGERPFSCKVCKKAFAQSSNLNRHLRAHTGERPFSCHVCKKRFSQLYNLNTHLRIHSGERPFYCEVCEKTFTYSSILKKHLRVHNGERPFSCKVCKKTFAESSTLNRHLRAHSGERPFSCDVCKNLFTQLHHLKIHLRIHSGERPFSCELCKKTFANRDVLKKHLRVHSGERHFTCKLCKKMFTRRFLLNQHLKSHISEQACS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00396616; iTF_00396464;
- 90% Identity
- iTF_00396616; iTF_00396464;
- 80% Identity
- iTF_00396616; iTF_00396464;