Csec004527.1
Basic Information
- Insect
- Cryptotermes secundus
- Gene Symbol
- -
- Assembly
- GCA_002891405.2
- Location
- NW:105018-109289[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.82 6.4e+02 0.1 0.0 26 45 162 181 155 184 0.85 2 8 0.00079 0.61 9.7 0.2 21 46 185 210 181 212 0.91 3 8 0.00043 0.34 10.6 0.1 21 45 213 237 210 241 0.92 4 8 0.075 58 3.4 0.2 21 51 241 271 237 274 0.86 5 8 1.5 1.2e+03 -0.8 0.0 22 45 270 293 268 297 0.83 6 8 0.0014 1.1 9.0 0.1 21 45 297 321 289 324 0.91 7 8 0.0088 6.9 6.4 0.2 21 46 325 350 321 357 0.88 8 8 0.3 2.3e+02 1.5 0.1 21 45 353 377 349 379 0.85
Sequence Information
- Coding Sequence
- ATGGCAAGTGAAGAAGAACGCCTTGAGAGATTGCGAAGGACGTTGCATTCCTTAGCAACTCGAGTCCCAAAAGTAATTCTGACACGAGTTGACTGGACATTTCCTGCTTTGAAGAATCAGGCTagtaTTAAATTAAATGGAGCAAATATTGAAGCAACACACGTCAATATGGATTTTAATGTTAAGGAATTTCGTCGTGAACATGGAGAAGAATTGTTAAACAGAGAAGGAATCTTCGATTCTTGCGAGATATGTAAGAAGTCATTCTCTCGTTGGAATAATTTGTTGGGACATGCAAGTGGAAGTAGTAGAGAAACAACGTCTCTTTGTGAATTGTGTGTCACATTGTTAAATCCTGAGCAGAGTGCAGTACCAGGATCAAGTATTCTCAGAGAGTCTTTCTCTTGCAAAGACTGCAACAACTTAACAAGTCACTCTAATTTGTACAACCATACCAGAGTGCATGCTGCAGATCGGGAATTTTCTTGCGAAGTGTGTAAGAAATCGTTCGTCCAGCGATCTAACCTAATCAAACATTTCAGAGTTCACAATGGAGAACGCCCTTTTTCGTGCAAAATTTGTAAGAAATCGTTCGCACAGCGCTCTAACCTAAACAAACATTTAAGAATTCACAATGGAGAACGGCCTTTTTCGTGCAAAGTGTGTATGAAATCGTTCGCACAGAGAAATAACCTAAACAGGCATCTCGGGACACACAGAGGGGAGCGACCGTTCTCGTGCGATGTATGTAAGAAACGGTTCATTCAGGTTTATCAACTAAATACACATCTCAGAATACACAATGTAGAAAGACCCTTTTATTGCGAGGTGTGTGAGAAAACATTCGCTAATGGCTCTATCCTGAAGAATCATCTGAGGGTGCACAATGGAGAACGGCCTTTTTCGTGCAAATTGTGTAAGAAAACTTTCACACAGAGTTCTACCTTATACAGGCATCTCAGGGCACACACTGGAGAGAGACCGTTCTCGTGCGATGTGTGCATGAAACGGTTCACTCAGCTGCATAACCTAAACATACATCTCAGAATACACAGTGGAGAAAGACCCTTTTCTTGcgaagtgtgtaagaaaacttTCGCTAATAGAGATATCCTGAAGAAACATCTGAGAGTGCACAGTTGA
- Protein Sequence
- MASEEERLERLRRTLHSLATRVPKVILTRVDWTFPALKNQASIKLNGANIEATHVNMDFNVKEFRREHGEELLNREGIFDSCEICKKSFSRWNNLLGHASGSSRETTSLCELCVTLLNPEQSAVPGSSILRESFSCKDCNNLTSHSNLYNHTRVHAADREFSCEVCKKSFVQRSNLIKHFRVHNGERPFSCKICKKSFAQRSNLNKHLRIHNGERPFSCKVCMKSFAQRNNLNRHLGTHRGERPFSCDVCKKRFIQVYQLNTHLRIHNVERPFYCEVCEKTFANGSILKNHLRVHNGERPFSCKLCKKTFTQSSTLYRHLRAHTGERPFSCDVCMKRFTQLHNLNIHLRIHSGERPFSCEVCKKTFANRDILKKHLRVHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00396569;
- 90% Identity
- iTF_00396569;
- 80% Identity
- iTF_00396569;