Csec004140.1
Basic Information
- Insect
- Cryptotermes secundus
- Gene Symbol
- -
- Assembly
- GCA_002891405.2
- Location
- NW:782174-791122[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.0013 1 9.0 0.0 23 44 86 107 80 115 0.81 2 7 1.5 1.2e+03 -0.8 0.0 21 44 168 191 165 195 0.73 3 7 0.054 42 3.9 0.0 24 44 199 219 193 226 0.86 4 7 0.022 17 5.1 0.0 22 43 225 246 221 253 0.85 5 7 0.013 10 5.9 0.0 25 44 256 275 250 285 0.79 6 7 0.091 71 3.1 0.0 24 43 283 302 277 308 0.85 7 7 0.078 61 3.3 0.0 26 46 313 333 306 340 0.82
Sequence Information
- Coding Sequence
- ATGAATGCAAGTAAGGAGGAACCACCTTTGGATATTGAGCCTGCCCAAGTCACCATGGAACATGAAGAGTTGATAGTTCCAGTAATATATCCAGAACCAAAGAGTGAAGAATCTGAAGAATCACTGGATTTACCAGTGGATGGAGTTGGAGCAGTACCTGAAGAGGAGGTATTAAGCAAGGACAGTCAACATGATTTCACCAAGTGTCAGCTGAAGTCATTCCCATGTGCATATGAACTTGGAAGTGAAACCAGAAAAAAATCCAGATGTCACATTTGTGGGAAAAAGTTTTCACAGAGTGGTAACTTGAAACGTCATTTTCTCACTCACACAGGGAAGAAATCTTTTAAATGTGACAGGTGTGGCAAGTTATTTTTACGTAGTGGACACTTAAAAGATCACATTCTTACACACACCGGTATAAGAGGTTTTAAATGTGATATTTGTGGAAGAGCTTTCTTGAAGAATGAACACCTGAAATTTCACATGTATACACATACTGGAGAAAAGCCTTTTAAGTGTGATGTATGTTTGAAAGATTTTTCACGAAGAGGACATCTAAAGGTTCATCTTCTTACACATACAGgagaaaatgaatttaaatgtgACATTTGTGCAAATGCTTTCTCACAGAAAGGTCACCTGAAGCGTCATATGCTCACACATACAGGCGAAAAGGATTTTAAATGTGACATTTGTGCGAAGAAATTTTCCCAGAGCGGACAGCTGAAGCGACATAATCTTACACATACTGGAGAGAATCATTTCAAATGTGACATTTGTGGGGTAGCATTTATAGCAAGTGGAAACCTCAAACGTCACATTCTTACACATACGGGAGAAAGACATTTCAAATGTGTTATTTGTGGCAAAGAATTTTCACAGAGCGGACATTTGAAACGTCACAACCTAATACACACTGGAGAATATAATTTCAAATGTGACATTTGTGGAAAAAGATTTTCTCAGAGTGGAAACCTGGAGTATCACATTCGTACACATACAGGGGACAAACCTTTTAGATGCAACGTGTGTGGGAAAGGTTTTCCTGTCAAGAACAAACTGAAGCATCACATGGTTATACACATAGGAGAAGAGCAATATAAGTGTAACATGTAG
- Protein Sequence
- MNASKEEPPLDIEPAQVTMEHEELIVPVIYPEPKSEESEESLDLPVDGVGAVPEEEVLSKDSQHDFTKCQLKSFPCAYELGSETRKKSRCHICGKKFSQSGNLKRHFLTHTGKKSFKCDRCGKLFLRSGHLKDHILTHTGIRGFKCDICGRAFLKNEHLKFHMYTHTGEKPFKCDVCLKDFSRRGHLKVHLLTHTGENEFKCDICANAFSQKGHLKRHMLTHTGEKDFKCDICAKKFSQSGQLKRHNLTHTGENHFKCDICGVAFIASGNLKRHILTHTGERHFKCVICGKEFSQSGHLKRHNLIHTGEYNFKCDICGKRFSQSGNLEYHIRTHTGDKPFRCNVCGKGFPVKNKLKHHMVIHIGEEQYKCNM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00396530;
- 90% Identity
- iTF_00396530;
- 80% Identity
- iTF_00396530;