Csec008494.1
Basic Information
- Insect
- Cryptotermes secundus
- Gene Symbol
- -
- Assembly
- GCA_002891405.2
- Location
- NW:205719-235831[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0025 2 8.1 0.2 21 47 157 183 152 188 0.89 2 12 0.25 2e+02 1.7 0.2 21 46 185 210 181 213 0.86 3 12 0.012 9 6.0 0.1 22 46 214 238 209 241 0.90 4 12 0.011 8.8 6.0 0.3 21 46 241 266 237 268 0.91 5 12 0.0031 2.4 7.9 0.1 21 46 269 294 265 297 0.90 6 12 0.0085 6.6 6.4 0.4 21 46 297 322 293 328 0.89 7 12 0.059 46 3.7 0.0 21 46 325 350 323 353 0.90 8 12 0.0064 5 6.8 0.0 21 45 353 377 349 380 0.90 9 12 0.44 3.5e+02 0.9 0.0 22 46 410 434 405 436 0.86 10 12 0.0021 1.6 8.4 0.1 21 45 437 461 434 464 0.92 11 12 0.0093 7.3 6.3 0.2 21 46 465 490 461 497 0.87 12 12 0.98 7.6e+02 -0.2 0.1 21 45 493 517 489 519 0.80
Sequence Information
- Coding Sequence
- ATGGCAAGTGAAGAAGTACGCCTTGAGAGATTGCGAAGGACGTTGCATTTCTTAGCAACTCGAGTCCCAAAAGTAATTCTGACACGAGTTGACTGGACATTTCCTGCTTTGAGGAATCAGGCTAGtgttaaattaaatgcagcaaaTATTGAACCAACACACGATAATGAGGATTTTAATGCCAAGGAACTTCGTCGTGAACAGGGAGCAGATTTGTTAAACAGAGAACAAAACTCCGATTCTTGCGGGATATGCAAGAAGTCATTCTCTCCTGGGATTAATGTGTTGCGTCATGCAAGTGGAAATAGTAGAGAAACAATGTCTCTTTGTGAAATGTGTGTCACATCGTTAACTCTCAAGCATAGTGCGGTACAAGGATCAAGTGGTCTCAGAGAGTCTTTTTCTAGCAAAGATTGCAAAAAGTTAACAAGTCACTCTAATTTGTACAACCATACCAAAGTGCATGCTGCAGAACGACCATTTTCTTGCGAAGTCTGTAAGAAAACGTTCCCCCAGCGCTCTAACCTAAACAAACATCTCAGAATTCACAATGGAGAACGGCCATTTTCTTGCGAAATGTGTAAGAAATCGTTCGCCCGGCGCTCTAACCTCAACATACATCTCAGAGTTCACAATGGAGATCGGCCTTTTTCATGCAAAATGTGTAAGAAAACGTTCGCCCAGCGATCTAACCTAAACAAACATTTAAGAATTCACAATGGAGAACGGCCTCTTTCGtgcaaagtgtgtaagaaaTCGTTCGCCCAGCGATCTAACCTAAACACACATCTCAGAGTTCACAGTGGAGAACGGCCTTTTTCGtgcaaagtgtgtaagaaaTCGTTCGCCCAGCGATCTAACCTAAACAAACATTTAAGAATTCACAATGGAGAACGGCCTCTTTCGtgcaaagtgtgtaagaaATCGTTCGCCCAGCGCTCTAACCTAAACACACATCTCAGAGTTCACAATGGAGAACGGCCTTTTTCGtgcaaagtgtgtaagaaaacGTTCGCCAAACGCTCTAACCTAAACACACATCTCAGAGTTCACAGTGGAGAACGACCATTTTCATGCGACGTGTGCAAGAAAACTTTCACACAGGGATCTACCCTAAACAGGCATCTCAGAGCACACAGTGGAGAGCGACTGTTCTCGTGTGATGTGTGTAAGAAACGGTTCATGCATCTTCATCACCTAAACATACATCTCAGAATACACAGTGGAGAAAGAACCTTTTCTTGCGAAGTGTGTGAGAAAACATTCACTCATAGCACTAGCCTGAAGAATCATCTGAGGGTGCACAATGGAGAACGCCCTTTTTTGtgcaaagtgtgtaagaaaacttTCGCACAGAGTTCAACATTAAACAGGCATCTCAGGGCACACAGTGGAGAGCGACCGTTCTCGTGCGATGTGTGTAAGAAACGGTTTACTCAGGTCCATAACCTAAACATACATCTCAGAATACACAGTGGAGAAAGACCCTTTTCTTGcgaagtgtgtaagaaaacttTCGCTAACAGATATATCCTGAAGAATCATCTGAGGGTGCACAGTTGA
- Protein Sequence
- MASEEVRLERLRRTLHFLATRVPKVILTRVDWTFPALRNQASVKLNAANIEPTHDNEDFNAKELRREQGADLLNREQNSDSCGICKKSFSPGINVLRHASGNSRETMSLCEMCVTSLTLKHSAVQGSSGLRESFSSKDCKKLTSHSNLYNHTKVHAAERPFSCEVCKKTFPQRSNLNKHLRIHNGERPFSCEMCKKSFARRSNLNIHLRVHNGDRPFSCKMCKKTFAQRSNLNKHLRIHNGERPLSCKVCKKSFAQRSNLNTHLRVHSGERPFSCKVCKKSFAQRSNLNKHLRIHNGERPLSCKVCKKSFAQRSNLNTHLRVHNGERPFSCKVCKKTFAKRSNLNTHLRVHSGERPFSCDVCKKTFTQGSTLNRHLRAHSGERLFSCDVCKKRFMHLHHLNIHLRIHSGERTFSCEVCEKTFTHSTSLKNHLRVHNGERPFLCKVCKKTFAQSSTLNRHLRAHSGERPFSCDVCKKRFTQVHNLNIHLRIHSGERPFSCEVCKKTFANRYILKNHLRVHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00396485;
- 90% Identity
- iTF_00396485;
- 80% Identity
- iTF_00396485;