Csec011893.1
Basic Information
- Insect
- Cryptotermes secundus
- Gene Symbol
- -
- Assembly
- GCA_002891405.2
- Location
- NW:1371166-1384964[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.25 1.9e+02 1.7 0.7 4 25 32 53 29 59 0.87 2 13 0.039 31 4.3 0.1 25 52 135 162 123 164 0.82 3 13 0.11 84 2.9 0.0 21 44 159 182 155 192 0.89 4 13 3.6 2.8e+03 -2.0 0.0 26 43 192 209 186 215 0.86 5 13 0.015 12 5.6 0.0 21 44 215 238 211 248 0.84 6 13 0.47 3.7e+02 0.9 0.0 23 43 245 265 241 270 0.88 7 13 0.012 9.6 5.9 0.0 21 44 271 294 267 304 0.84 8 13 0.037 29 4.4 0.0 23 52 301 330 297 332 0.86 9 13 0.033 26 4.5 0.2 22 52 328 358 324 359 0.84 10 13 0.016 12 5.6 0.0 22 44 356 378 353 386 0.84 11 13 0.0091 7.1 6.3 0.0 21 52 383 414 380 415 0.87 12 13 0.026 20 4.9 0.0 22 43 412 433 407 438 0.88 13 13 0.0031 2.5 7.8 0.2 21 46 439 464 436 472 0.87
Sequence Information
- Coding Sequence
- ATGCGAGAGTCGCTCCTGGAGCAAAAAGAGGAATCTGCCGAGGAGTTTCGCGAGCAAAGAAGGCGCAAACGAAACCCCTCAGAGGAGCAGAATAAAAAGCCAAAGCCGTCACCCAACCCGAGGGACCCCAGGATAAAATCCCAGGTTGAAGTACCAACAAGGAACTTTTTTGCGACCCTCAGGACAACGGAAATGGACGTCGCGGAGGAGACAACCGAGAAGGAAGAGCAGCAGTCATCTTGCAGCAGGTCAGGACAAAGCTATCTGAACAAGAATGTAATGCAACAAAGTGGAGGGCAGGTTAGTAATGGGAAGCCATATTCTAGCAAGATTTGCGGCAAAGCATTTACACTGCAAGGCAATCTGCAAAAGCATGAAGTAACTCACAGTGGTCAGAAGTCTTATGTTTGTAACATTTGCAACAAAGCCTTTAACCAACAAGGGAATTTGTACAAACACCAAAAGATTCATACTGGTGAAAAACCACACATATGTGGTATGTGTGGGAAAGGCTTTTCCCAGCGTGGTAATCTTCAAAAGCATGCTTTAATACATACAGGGATGAAGTCACATGTGTGCACTGTCTGTGGAAAAGGGTTTAACCAGTTGGGTAATTTGCATAAACATGAATTCATTCATAGCGGGGAGAAACCACATGtctgtggaatttgtggtaagGGCTTTAGCCAACAAGGAAATCTACATAAACATGAATTTATTCACACAGGACTGAAACCCCATATTTGTAAACTCTGTGGGAAGGGTTTTACACAGCAAGGCAACTTGAAGAAACATGAAGTAATACATACTGGTGAAAAGCCTTTTTCGTGTAATGTATGTGGAAAGTGTTTTACACAAGAAGGAAATCTTCAGAAGCATGAGATAATTCATACAGGGAGGAAGCCTCACATGTGTAAAATGTGTGGAAAAAGTTTCTCCCAGCAAGGGAATTTAAGCAAGCATTTAATTATTCACAGTGGACAGAAGCCATATATTTGTAGAATCTGTGGTAAGAGGTTTACACAGCAGGGGAATCTGCAGAAGCATCAGATTCTTCACACAGGACAGAAGCCACatgactgtaaagtgtgtggcAAGAGTTTTACCCAACAAGGGAACTTGCGTAAACATGAAATAATACATACTGGTGAAAAGCCGTTTGGCTGTAAGGTGTGTGGTAAGCAGTTCTCCCAAGgaggaaatttaaaaaaacatatGGTTATTCATAGTGGACAGAAACCACATGCATGTGTGATATGTGGTAAGGCATTCTCTCAGCAAGGGAATTTGCAAAAACATGAGATTATTCACACTGGAGAAAAACCTTATCCTTGTACTGTCTGTCAAAAGAGGTTCACTCAACAAGGAAATTTGAGAAAACACGAGACTCTACATCTTGGGCAGAAGTCTCATGTTTGTGATGTTTGTggaaaagaattttcacttcaagCAAATCTCAGCAAGCATGCAGCATTTCATAATAGACTGTCAGTGTTTGGTTGGTGA
- Protein Sequence
- MRESLLEQKEESAEEFREQRRRKRNPSEEQNKKPKPSPNPRDPRIKSQVEVPTRNFFATLRTTEMDVAEETTEKEEQQSSCSRSGQSYLNKNVMQQSGGQVSNGKPYSSKICGKAFTLQGNLQKHEVTHSGQKSYVCNICNKAFNQQGNLYKHQKIHTGEKPHICGMCGKGFSQRGNLQKHALIHTGMKSHVCTVCGKGFNQLGNLHKHEFIHSGEKPHVCGICGKGFSQQGNLHKHEFIHTGLKPHICKLCGKGFTQQGNLKKHEVIHTGEKPFSCNVCGKCFTQEGNLQKHEIIHTGRKPHMCKMCGKSFSQQGNLSKHLIIHSGQKPYICRICGKRFTQQGNLQKHQILHTGQKPHDCKVCGKSFTQQGNLRKHEIIHTGEKPFGCKVCGKQFSQGGNLKKHMVIHSGQKPHACVICGKAFSQQGNLQKHEIIHTGEKPYPCTVCQKRFTQQGNLRKHETLHLGQKSHVCDVCGKEFSLQANLSKHAAFHNRLSVFGW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00396483;
- 90% Identity
- iTF_00396483;
- 80% Identity
- iTF_00396483;