Basic Information

Insect: Cryptotermes secundus
Gene Symbol: L_1
Assembly: GCA_002891405.2
Location: NW:309940-919963[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 24 1.1e-05 0.00032 20.5 1.0 1 23 223 245 223 245 0.98

2 24 0.54 15 5.8 5.9 1 23 251 273 251 273 0.98

3 24 2.7e-06 7.8e-05 22.4 4.3 1 23 279 301 279 301 0.99

4 24 4.6e-05 0.0013 18.6 0.2 1 23 307 329 307 329 0.98

5 24 5.9e-05 0.0017 18.2 0.2 1 23 365 388 365 388 0.97

6 24 0.096 2.7 8.1 0.1 1 23 509 532 509 532 0.91

7 24 1.9 53 4.1 0.1 3 23 560 581 558 581 0.88

8 24 0.92 26 5.0 0.3 3 23 663 683 662 683 0.98

9 24 1.6 46 4.3 0.1 3 13 725 735 723 748 0.84

10 24 0.11 3.2 7.9 0.1 3 23 758 779 756 779 0.93

11 24 0.037 1.1 9.4 0.3 1 23 784 807 784 807 0.92

12 24 0.22 6.3 7.0 3.9 1 23 885 907 885 908 0.95

13 24 0.0078 0.22 11.5 4.6 2 23 1017 1038 1016 1038 0.96

14 24 0.14 4.1 7.6 0.5 1 23 1048 1070 1048 1070 0.97

15 24 0.77 22 5.3 0.3 3 23 1079 1099 1077 1099 0.96

16 24 0.0039 0.11 12.5 0.4 1 23 1230 1253 1230 1253 0.94

17 24 1.3 36 4.6 2.7 1 23 1257 1279 1257 1279 0.97

18 24 0.97 28 5.0 2.3 1 23 1287 1309 1287 1309 0.96

19 24 0.049 1.4 9.0 0.4 1 23 1317 1339 1317 1339 0.97

20 24 1.8 51 4.1 2.0 1 23 1346 1368 1346 1368 0.94

21 24 0.0019 0.054 13.5 1.6 2 23 1442 1463 1441 1463 0.97

22 24 3.1e-05 0.00088 19.1 4.2 1 23 1474 1496 1474 1497 0.95

23 24 0.00095 0.027 14.4 0.7 1 23 1529 1552 1529 1552 0.92

24 24 1.7e-05 0.00049 19.9 0.5 1 23 1553 1576 1553 1576 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	24	1.1e-05	0.00032	20.5	1.0	1	23	223	245	223	245	0.98
2	24	0.54	15	5.8	5.9	1	23	251	273	251	273	0.98
3	24	2.7e-06	7.8e-05	22.4	4.3	1	23	279	301	279	301	0.99
4	24	4.6e-05	0.0013	18.6	0.2	1	23	307	329	307	329	0.98
5	24	5.9e-05	0.0017	18.2	0.2	1	23	365	388	365	388	0.97
6	24	0.096	2.7	8.1	0.1	1	23	509	532	509	532	0.91
7	24	1.9	53	4.1	0.1	3	23	560	581	558	581	0.88
8	24	0.92	26	5.0	0.3	3	23	663	683	662	683	0.98
9	24	1.6	46	4.3	0.1	3	13	725	735	723	748	0.84
10	24	0.11	3.2	7.9	0.1	3	23	758	779	756	779	0.93
11	24	0.037	1.1	9.4	0.3	1	23	784	807	784	807	0.92
12	24	0.22	6.3	7.0	3.9	1	23	885	907	885	908	0.95
13	24	0.0078	0.22	11.5	4.6	2	23	1017	1038	1016	1038	0.96
14	24	0.14	4.1	7.6	0.5	1	23	1048	1070	1048	1070	0.97
15	24	0.77	22	5.3	0.3	3	23	1079	1099	1077	1099	0.96
16	24	0.0039	0.11	12.5	0.4	1	23	1230	1253	1230	1253	0.94
17	24	1.3	36	4.6	2.7	1	23	1257	1279	1257	1279	0.97
18	24	0.97	28	5.0	2.3	1	23	1287	1309	1287	1309	0.96
19	24	0.049	1.4	9.0	0.4	1	23	1317	1339	1317	1339	0.97
20	24	1.8	51	4.1	2.0	1	23	1346	1368	1346	1368	0.94
21	24	0.0019	0.054	13.5	1.6	2	23	1442	1463	1441	1463	0.97
22	24	3.1e-05	0.00088	19.1	4.2	1	23	1474	1496	1474	1497	0.95
23	24	0.00095	0.027	14.4	0.7	1	23	1529	1552	1529	1552	0.92
24	24	1.7e-05	0.00049	19.9	0.5	1	23	1553	1576	1553	1576	0.98

Sequence Information

Coding Sequence: ATGTCGCGCCGGAAACAAGCCAAACCACGAGCACTGAAGAGGGAGGAGGAGTGGGAGTCCGAGTGTGGAGAAGAACCGCCAGAAGGCGCTGTGTCTGGTTCCACGGAGGATGATATGATACCAGCCACGGCAGGAGGGGAATGTTCCCCCGTTCCTACTGCTGCTGGCTCTTCGTCCTCACCACCACCCTCACTAGCTCGACAGCCCAATGGCGAGATTGCGACCAGCAGTAATCATAAAGGTGAGGAGAATGAAAAGACGCCTTCCTCCGCGTCGGATCCTGGACAGCAGTCGGGGGCGACGCCCCGCTATGATGTCACTCTGGAAGGTCTCCAGTTGGCATTAATGGATCGTCATAACTTCCCAGGTATCTCGGAGGCGTTCCTGAATAATGGGGCGGGTAACAGCGGTGCCGACACGGCGACGTCTTCGCGTCTCCTCAGCCCACCCCCTGCCGCCTCCACGGCAGCGACCGTCGTGCCGGGTGAGGCCGATAACAGCCTTGAGTCCGACGCTCTCGGGACCGATCCGGGATCGTCGTGGCGCTCCGAGACGCCGGAAGATCAGACGTCGCCCTCCCCTAGCTCTTGTGCTACCCCGAACTCCGCCACGGACGTCCCCGACGCCGAATTAACCTTCACCGTTGGGGTGACTGAGGGAACGCCAtatgcttgccagttttgcgacAAGGCGTTCCCTAGGCTCAGTTATCTCAAGAAACATGAACAGACGCACAGTGATCAGATGCCCTTCCGCTGCGAGTTCTGCAGCCGGCTTTTCAAGCATAAGAGAAGCCGTGACCGACACATCAAGCTGCACACGGGCGACAAGAAGTACAGGTGCACGCACTGCGAGGCTGCCTTTTCCAGGAGTGATCACCTGAAGATTCACATGAAGACGCACGACAACCAGAAGCCATTCCAGTGTACAGTGTGTAACAGGGGCTACAACACAGCAGCAGCCCTTACCTCGCACATGCAGAACCACAAGAAAGACCAGCAACATCAGCAGCAACAGAATGGCcataacaacagcaacagcagccGCGCTAGCAGCAACAATACGCCTAGTCCCGGAGCTGCCTGTCCTTCCTTCCGCTGCTTGCAGTGTGGCGAAACATTCCGGAAGCCAGAGGAACTTCAGGGTCACATGGTAACGCAGCACAATGTAGAGACAGGTGGTTCGCCCCTGGGACCCATCAGTAGAGGGCTGCTAGGGGGTCTCATGCTTGGTGATTCCCCTTTGGCAAGGTCGCCATCTCGAACCTTATCATTCCCAGCTCCAAAACTGGCTTGCATCTACTGCACTAAGGATAGCTTCACCACTATGGAAGCCCTGCAGTTGCACGTCCAGGCTATGCACGGTTCCATACTGAATGGTGAACTACGAGACTTCACCAGTCTGTCACAGCATCAGGCAAGTCCAAGTCCCAGCCTAACACCTCACCGTCTGCTCACATCACCAAATGGAGGCGGGAACAGCGCCAGCAATAACCACACTGTGACTTCAACAACTCTCATGCCTTATTCCTGCGACCTGTGCACAATGAGGTTTGGTACCATCCAGGGTCTCCAGAAGCATGCTCTTGCTGTGCATGGCCTGATGAGTCCAAACAACATGGGGATTGGAAGCAAGGATCATCATAATGAAGCAGCTGGAAGTACCGCTGGTCTGTTTTGTGTACAGTGCTCTCTATCATTTCCATCAGCTGCTCTGTTTGCTGAACACTATGTCCTCTTACATGCATCTAGCAGTGCAACTGGGCGACTCATGATTCCATCTTCTTCAGCCCCCGAACAACTAAAACCTACGGATCTCAGCAAGAAGGCACATCGACATTCACAGCACCATGAAGAGAGATCACCACCAAAGAGACATAAAGCCTCAGTGGAAAATTCAGCAGCACCAACAGTCACCATGCCAGATACCCCAACTTCTGCACCAAGTAGTATGGTGAATCAGTATGAACATCCAGGAACTCTACTCTGCAATCAGTGCAGTGCTGCTCTGCCTGACTTTGAATCATTCCGGACGCATCTGAAATCTCACTTAGAGGAGGCAGGTGGGCTGCGAGGATTGCTAGGAGGTGGAAGTGACATCATGGGGATGTTATCAAGCCAAGATAGCCGAGTAAGCAGTTCCAAGAGCCCAGCTTCTTCAGGGGCTCTTGCATGCCCACACTGTGGTGCTAAGTTCTCTGGAGCAGATGATCATCAAGCTTTCGAACAGCATGTTGCCACACATTTCATGGCCACTGCCACAGAGTATGGCTGTCAGAGTTGCCTCAAACTTTTCCCTAAACCTGATGAGTTGCAGAAACATCTGATGGACATCCATGCTCATCACCTCTATCGCTGCTCTCTATGCAAGGAAATGTTTGACACCAAAGTTGCAATACAGGTTCACTTTGCAGTGAAGCACAGCAATGAATGCAAGCTGTACAGGTGTACTGCGTGTCCTTCATCGAGTGCAGTATTTCGTTCAGAGCTGGACTTTGGTCTGCATGTACGATCTTCTCATGCTCCACTTCCTTTGCTCACTGGGGCAGCCAATAAGACCCCAACACAACAGCCCTTTCGCTGCCTGTTTTGTCACCTCAGCTTTGGCACTGAGCTTGAAATGCAGTTCCATTTGGCAGCACATTCAAAGCAGTTCCACTGTCCACTGTGCCAAGAAGCCTTCCATGTGGAGTTTCTGCTGGACAAGCATGTGCAGACACATCACAGCTCTCAGGTGCTGAATGGCAATGGAACAAGTTCAACTGAGAATCTGAGTCAACAACAGAAGTCTCCTAAAAGTAAAACATCTGGAGTGACACCATCAACAACACTCCCCAGTAACAACAACTCATCAGGGTCCAGTAACAGTGCAAGCCGCAACAGCAATAATAATGAGAACAGTAGCAAGAAGATTGACCAATCTAACAATAACTGCTGCTGTGATATCTGTGACCGTTGTGATTTTGGAAGTGAGGCAGAACTCACAGCTCACCGAAAATTGGTACATCATATCAAATCAGCAACAGGGAAGAACGGTGCTGTGAGTCTTCATTGTGCATACTGCAGTGAGAATTGTAAGTCACGCACTGAACTGGAAAACCACATGAAAACACATTCACAGGGTAGCAGTGGTTCAGGGAAACACAAATGTAATATATGTGATGAACTCTGTCCTTCAGCTGCTGTCCTTGCTGAACATAAGCTGACACATTGCAAGGTGATATCTGGGAGCATTTGCACACTGTGTAAGGCTACACTTGTCAGTGAGGACCAGTTTTACACACACCTTCAGCAACATAGTTCAAACAGTAATAACACTAGTGCTCAAGGGAATACAAACAGTGTGCAGCAGCAAGTGGTTTTGCCCACCCCTTGTGTTGTCTGCAGACAAACCCTTATATCTGACATAGAAGTCAGGATGCATGCCAGGTTCCATCTCAAGAACTCTGCCGCGCTTACAGTCACAGAGCCCATGTATCAATGCTGTCTGTGCCTGAAACAATTTGAAATGCAGAATCTCATTGCTGCGGGTGGTAGTAATGGAGTTGTACCAAGCATTCAGGGAACTTCATATGTCTGCAAGGACTGCTACCACTGTCATAGCAAAACATCACCAtcacagcagcaacagcaacaggcTACTCAACAGCAGCAACTTGGACATCCACTGCAGTTGCAAGAACAAATTTTCCATTGTTCTGAGTGCCAAGTGAAGTTTGAGACCAGCACAGCTCTTGAAGCACATCTAGTGTCTGTCCACAGGAAGACCTACCAGTGCATCAAATGCCAGAAGAGTTGTGAGACAGAGCATGAAATACAATTGCATGTGGCTACACATATGCTGACAGAAGGGAGCAGCCATGAGTGTCACCTCTGTCGCCGGTTATTAACTACTCCACTGAAGCTGCAGACACATCTCATAGAGCATACATTTGCTGGCTGTGGCAGCTTCACCTGCTACCTGTGTAGTGCTGTGTTCACGGCAGCACAAGGCTTACATCAACACATGCTGGAGCATGGCCTGGATGCAAGACCCTATGACTGTTCTCGATGCAGTCAGCGCTTCTTCTTCCGTGCAGAGTTGGACAACCACAGCTACAGCCATGATGAAGAGGAAGCAGTTGCTATGGCAAATCCCTCAGCATTGttagatggaggagatatggcAAGCAAGAGTCCCTACTATCACCATTTGAACACAAATGGAACATACGATTCTTCAAATCCAGATATGCATTACTACAGGACATTAATTCAAGAATCATCAAAACAGCAAAAACACAAAAGCAATAAAAGTCACAGCTCTAAAGGAGCAGCCATGTTGAAATGTTGGGAATGTAACAAAGAATTCAGCAGCATTCTAGGTCTACAGACACATCAGCGACATCACAGACATACATCAAACACAAATAAGAAAGTTCATACTtgtaatgaatgtggaaaaggGTTTGGGATGGCAAAACATCTTAATGTTCACATGCGATCACATCACGAAAACCACAATGGTGAAGAGCATACCTCTGAAGAAAAGAACACTGTCTCTGAAGAACACCATCAGTCAGAGGGAAACAAACCAGGATCTACTCATGCCTGTCCAGTATGTCATAAAGATTTCCCTGATGttgacagtctcaccacacACATAACTTTGCAGCACTTTCGCTGTCCACAGTGTGGTGAAGCATTTGTACGTCAGCGTCATGTTGTTGATCATATCAGAAAGGTGCATTCAACTGAAGAAGGGCAGTACATTACTGGAGATCATTTGtcaacagaaatgaatgatTTGGAGGTGAAAGAAGAGCCAGTTATGATTAAAGAAGAGAATGAAGATGAAAACATTGATGTCTCATCATTGACTCCAACAGATCAGCAGTATGGTGGCTCCCCTGAGCACCACGCTTTTGCAGAATGTGGTGAAAAATCAAACAGACAAAGCATTGAAACATCACACCTAAACATTCACAATCTTCCATCTTCTCCCAATGCTGCACATCCAAGCAACAGTATAAATGATGGCAAtgatactgatgatgatgaaacaaGCTTGTCTCGAACACCACCAGTAAATGGCGATAATGAACATTAA
Protein Sequence: MSRRKQAKPRALKREEEWESECGEEPPEGAVSGSTEDDMIPATAGGECSPVPTAAGSSSSPPPSLARQPNGEIATSSNHKGEENEKTPSSASDPGQQSGATPRYDVTLEGLQLALMDRHNFPGISEAFLNNGAGNSGADTATSSRLLSPPPAASTAATVVPGEADNSLESDALGTDPGSSWRSETPEDQTSPSPSSCATPNSATDVPDAELTFTVGVTEGTPYACQFCDKAFPRLSYLKKHEQTHSDQMPFRCEFCSRLFKHKRSRDRHIKLHTGDKKYRCTHCEAAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQNHKKDQQHQQQQNGHNNSNSSRASSNNTPSPGAACPSFRCLQCGETFRKPEELQGHMVTQHNVETGGSPLGPISRGLLGGLMLGDSPLARSPSRTLSFPAPKLACIYCTKDSFTTMEALQLHVQAMHGSILNGELRDFTSLSQHQASPSPSLTPHRLLTSPNGGGNSASNNHTVTSTTLMPYSCDLCTMRFGTIQGLQKHALAVHGLMSPNNMGIGSKDHHNEAAGSTAGLFCVQCSLSFPSAALFAEHYVLLHASSSATGRLMIPSSSAPEQLKPTDLSKKAHRHSQHHEERSPPKRHKASVENSAAPTVTMPDTPTSAPSSMVNQYEHPGTLLCNQCSAALPDFESFRTHLKSHLEEAGGLRGLLGGGSDIMGMLSSQDSRVSSSKSPASSGALACPHCGAKFSGADDHQAFEQHVATHFMATATEYGCQSCLKLFPKPDELQKHLMDIHAHHLYRCSLCKEMFDTKVAIQVHFAVKHSNECKLYRCTACPSSSAVFRSELDFGLHVRSSHAPLPLLTGAANKTPTQQPFRCLFCHLSFGTELEMQFHLAAHSKQFHCPLCQEAFHVEFLLDKHVQTHHSSQVLNGNGTSSTENLSQQQKSPKSKTSGVTPSTTLPSNNNSSGSSNSASRNSNNNENSSKKIDQSNNNCCCDICDRCDFGSEAELTAHRKLVHHIKSATGKNGAVSLHCAYCSENCKSRTELENHMKTHSQGSSGSGKHKCNICDELCPSAAVLAEHKLTHCKVISGSICTLCKATLVSEDQFYTHLQQHSSNSNNTSAQGNTNSVQQQVVLPTPCVVCRQTLISDIEVRMHARFHLKNSAALTVTEPMYQCCLCLKQFEMQNLIAAGGSNGVVPSIQGTSYVCKDCYHCHSKTSPSQQQQQQATQQQQLGHPLQLQEQIFHCSECQVKFETSTALEAHLVSVHRKTYQCIKCQKSCETEHEIQLHVATHMLTEGSSHECHLCRRLLTTPLKLQTHLIEHTFAGCGSFTCYLCSAVFTAAQGLHQHMLEHGLDARPYDCSRCSQRFFFRAELDNHSYSHDEEEAVAMANPSALLDGGDMASKSPYYHHLNTNGTYDSSNPDMHYYRTLIQESSKQQKHKSNKSHSSKGAAMLKCWECNKEFSSILGLQTHQRHHRHTSNTNKKVHTCNECGKGFGMAKHLNVHMRSHHENHNGEEHTSEEKNTVSEEHHQSEGNKPGSTHACPVCHKDFPDVDSLTTHITLQHFRCPQCGEAFVRQRHVVDHIRKVHSTEEGQYITGDHLSTEMNDLEVKEEPVMIKEENEDENIDVSSLTPTDQQYGGSPEHHAFAECGEKSNRQSIETSHLNIHNLPSSPNAAHPSNSINDGNDTDDDETSLSRTPPVNGDNEH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01567276; iTF_00370424;
90% Identity: -
80% Identity: -