Cfor011250.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Coptotermes formosanus
Gene Symbol
L
Assembly
GCA_013340265.1
Location
BLKM01006251.1:687809-1062512[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 6.5e-06 0.00031 20.5 1.0 1 23 131 153 131 153 0.98
2 25 0.31 15 5.8 5.9 1 23 159 181 159 181 0.98
3 25 1.6e-06 7.5e-05 22.5 4.3 1 23 187 209 187 209 0.99
4 25 2.6e-05 0.0013 18.6 0.2 1 23 215 237 215 237 0.98
5 25 7e-06 0.00034 20.4 0.3 1 23 275 298 275 298 0.98
6 25 0.098 4.7 7.4 0.1 1 20 419 438 419 442 0.91
7 25 2.4 1.2e+02 3.0 0.0 3 23 472 493 470 493 0.87
8 25 0.52 25 5.1 0.3 3 23 574 594 573 594 0.98
9 25 0.42 20 5.4 0.1 2 13 635 646 634 659 0.84
10 25 0.063 3 8.0 0.1 3 23 669 690 667 690 0.93
11 25 0.03 1.4 9.0 0.3 1 23 695 718 695 718 0.92
12 25 8 3.9e+02 1.4 0.3 1 19 770 788 770 792 0.77
13 25 0.023 1.1 9.4 4.4 1 23 796 818 796 819 0.95
14 25 0.0044 0.21 11.6 4.6 2 23 920 941 919 941 0.96
15 25 0.082 4 7.6 0.5 1 23 951 973 951 973 0.97
16 25 0.33 16 5.7 0.6 2 23 981 1002 980 1002 0.96
17 25 0.00034 0.016 15.1 0.1 1 23 1136 1159 1136 1159 0.97
18 25 0.36 17 5.6 0.2 1 23 1163 1185 1163 1185 0.97
19 25 0.44 21 5.3 0.9 1 23 1193 1215 1193 1215 0.96
20 25 0.0082 0.4 10.8 0.1 1 23 1223 1245 1223 1245 0.97
21 25 1.7 81 3.5 1.7 1 23 1252 1274 1252 1274 0.94
22 25 0.0021 0.1 12.6 1.8 2 23 1348 1369 1347 1369 0.97
23 25 1.1e-06 5.5e-05 22.9 1.0 1 23 1380 1402 1380 1403 0.96
24 25 0.0034 0.16 12.0 0.4 1 23 1435 1458 1435 1458 0.92
25 25 4.6e-06 0.00022 21.0 1.0 1 23 1459 1482 1459 1482 0.98

Sequence Information

Coding Sequence
TCGGATTCTGGACAACAGTCGACGGTGCCCCACTATGATGTCACTGTGGAAGGCCTCCAGTTGGCACTAATGGACCGTCGTAACTTCTCAGGCATCTCGGAATCATTCCTGAATAGCGGTGCGGCCAACAGCGGCGCTGACACGGTGACGTCTTCGCGTCTCCTCAGCCCACCCCCTGCCGCCTCATCAGTGGCGACCGTCGTGCCGGGCGAGGCTGATAACAGCCTGGAGTCCGACGCCCTGGGGACCGATCCGGGATCGTCGTGGCGCTCCGAGACTCCAGAAGACCAGACATCGCCCTCCCCTAGCTCCTGTGCCACCCCCAACTCCGCCACGGACGTGCCCGACGCCGAATTAACCTTCACCGTTGGGGTGACTGAGGGAACGCCCTATGCTTGCCAGTTCTGCGATAAGGCGTTCCCTAGACTCAGTTACCTCAAGAAACATGAACAGACGCATAGTGATCAGATGCCATTCCGCTGTGAGTTCTGCAGTCGGCTTTTCAAACACAAGAGGAGCCGAGACCGCCACATCAAGCTGCACACGGGCGACAAGAAATACAGATGTACACACTGCGAGGCCGCATTTTCCAGGAGCGACCACCTGAAGATTCACATGAAGACGCACGACAACCAGAAGCCGTTCCAGTGCACAGTGTGCAACAGGGGTTACAACACAGCGGCGGCCCTTACCTCGCACATGCAGAACCACAAGAAagaccagcagcagcagcaacagcagcaacaacagaatggacacaacagcaacagcagccgCGCTAGCAGCAATAACACACCGAGTCCTGGAGCTGCCTGCCCTTCCTTCCGCTGTCTGCAGTGTGGCGAAACCTTCCGGAAGCCCGAAGAACTGCAGGGCCATATGATGACGCAGCACAGTGTGGAGACACGTGGTTCACCCCCGGGTCCCATCAGTAGAGGGCTGCTAGGGGGCCTTATGCTGGGGGATTCCCCTCTCGCCAGGTCCCCATCCCGACCATTACCTTTCCCAACCCCAAAACTGGCCTGCATCTACTGCACTAAGGACAGTTTTACCACCATGGAAGCCCTGCAGCTGCACGTCCAGGCAATGCACGGTTCGATACTTAATGGTGAGCTGCGAGACTTTGCCAGTCTCTCACAGCATCAGGCAAGCCCCAGTCCCAGCCTGACACCCCACCGTCTGCTCACCTCACCAAATGAAGGTGGGAGCAGCTCAAGCAATAACCACACTGTGACTTCAACAAGCCTTATGCCTTATTCTTGCGACCTGTGCACTATGAGGTTTGGTACCGTCCAAGGTCTTCAGAAACATGCTGTTGCAGTGCATGGGCTGATGAGTCCCAACAACCTGGGGGCTGGAAGCAAGGACCACCATAATGAAGCAGTTGGAGGTACCCCTGGTGCTGGTCTGTTCTGTGTACAGTGCTCTCTGTCATTTCCATCAGCCCCTTTGTTTGCCGAGCATTATGTGCTGATACATGGCTCCAGCAGTGCTGCTGGGGGGCTCATGATACCATCCTCTCCAGCACCTGAGCAACTGAAACCGACAGATCTTAGCAAGAAGGCACATCGACATTCACAGCACCATGAAGATAGATCACCACCAAAGAGACATAAATCGTCAGTGGAAAATGCACAGTCACAATCAGTTGCTATGTCTGACACTCCAGCTTCTGCGTCAAGTATGGTTAATCAGTATGAACATGCAGGCACCCTTCTCTGCAACCAGTGCAGTGCTGCTCTACCTGACTTTGAATCATTCCGGACACATCTCAAGTCCCACTTAGAGGAGGCAGGTGGACTTCGTGGTTTGCTAGGAGGTGGCAGTGACATAATAGGCATGTTGTCAAACCAAGACAGCCGAGTAAGCAGTTCCAAGAGCCCAGCCTCCAATGGGGCTCTTACATGCCCACACTGTGGTGCTAAGTTCTCTGGTGCAGATGATCACCAAGCCTTTGAACAGCATGTTGCCACACATTTCATGGCCACTGCCACAGAATATGGTTGTCAGAGTTGTCTGAAACTTTTCCCCAAACCTGATGAGCTGCAGAAACATCTGATGGATATCCACGCTCATCATCTTTATCGCTGCTCTTTGTGCAAGGAAATGTTTGACTCTAAAGTTGCAATACAGGTTCACTTTGCAGTGAAACACAGCAATGAATGTAAGCTGTACAGATGTACTGCGTGTCCTTCATCAGGCACAGTGTTTCGTTCAGAGCTGGACTTTGGACTTCATGTACGATCTGCTCATGCTCCTCTTCCCCTGCTCACTGGGGCTGCCAATAAGACTCCAACACAACATCCCTTCCGTTGTCTGTTTTGTCGACTCAGCTTTGCCACTGAACTTGAAATGCAGTTTCATCTGGCAGCTCATTCAAAGCAGTTCCACTGTCCACTATGTCAGGAAGCCTTCCATGTGGAATTCCTGCTGGACAAACACATGCAGACACATCACACCTCTCAGAATCTTAGTCAACAACAGAAGTGTCCCAAAAATAAGACATCTGGAGTGACACCTTCATCTACAACACACTCCAATAACAATAATTCATCAGGGTCCAGTAACAGCACAAGCCGCAATAGCAACAGCAATAATGAAGGCAACAGTAGCAAGAAAAGTGATCAAACCAATAATAACTGCTGCTGTGACATCTGTGACCGCTGTGATTTTGGAAGTGAGGCAGAACTTGTAGCTCACCGAAAACTGGTACATCATATAAAATCCACTACGGGAAAGAACGGTCCTGTGAGTCTTCATTGCGCATACTGCAGTGAGAATTGTAAATCACGTACTGAACTGGAAAACCACATGAAAACACATTCACAGGGTAGCAGTGGCTCAGGGAAACACAAGTGTAATATATGTGATGAACTGTGTCCCTCAGCTGCTGTACTTGCCGAACACAAGCTGACACATTGCAAGGTGATATCAGGCAGCATGTGTACACAGTGTAAGGCTACACTTGTTAGTGAGGACCAGTTCTACAcacatcttcagcaacacaattcaaacaataacaacagtagTGCTCAAGCAAATACAAACAGTGTACACCAACAGGTGGTTTTGCCTACTCCATGTGTTGTCTGCAGGCAAACTCTTATATCTGACATAGAAGTTAGAATGCATGCGAAGTTTCATCTGAAGAACACTGCTGCTCTCACAGCAGAACCCATGTACCAATGCTGCCTGTGCTTGAAACAGTTTGAAATTCAGAATCTCATTGCTGTGAGTGGTGGTAATGGAGTTGTGCCAAGCATTCAGGGAGCAACACATGTATGCAAGGACTGCTACCACTGTCACAGTAAAACATCACcatcacagcagcagcagcagcagcagcagacttctcaacagcaacagcaaccaCTGGGACATCCAATGCAGCAACAAGAACAAGCTTTCCGTTGTTCAGAGTGCCAAGTGAAGTTTGAGACAAGCACAGCTCTTGAAGCACATCTGGTGACTGTCCACAGGAAAACGTACCAATGCATCAAATGCCAAGTGAGTTTTGAGACAGAACGTGAGATACAGATGCACGTGGCTACACACCTACTGACAGAAGGAAGCAGCCATGAGTGTCACCTGTGTCGTCGGTTGTTAGCTACCCCACTAAAGCTGCAGGCACACCTCATAGAGCACACATTTGCAGGCTGTGGCAGCTTTACCTGCTACCTGTGTAGtgctgtgttcacagcagcTCAAGGCTTACAGCAGCATATGCTGGAGCATGGCCTGGCTGCACGACCTTATGACTGTTCAAGATGCAGTCTGCGCTTCTTCTTCCGTGCTGAGTTGGACAACCACAGCTACAGCCATCTTGAAGAGGATGCAGTTGCTATGTCAAATCCCTCAGCATTGTTAGATGGAGGAGACATAGCAAGTAAGGCTGCCTACTATCACCACTTGAACACAAATGGGACATATGACTCTTCAAATTCTGACATGCACTACTATAAGACTTTAGTTCAGGAAACTTCAAAACAGcataaacacaaaagcaataaaaatcaCAGCAGTAAAGGAGCAGTAGTGTTGAAATGTTTGGAATGTAACAAAGAATTCAGCAGCATTCTAGGTCTTCAGACACATCAGCGGCATCACAAACACACATCAGGCACAAGTAAGAAAGTTTATACttgtaatgaatgtggaaaagaGTTTGGAATGCCAAGAAATCTTAGTGTCCACATGCGGTCACATCATGAAGATCACAGTGGTGAAGAGCGAGCCTCTGAAGGCATGAACATTGTTACTGAAGAACTTTATCAGTCAGAGGGAAACAAGCCAGGATCTCCTCATGCCTGTTCATTATGTCACAAAGGTTTCCCTGATGCTGACACTCTTGGCGCACATATAACACTGCAGCACTTTCGCTGTCCACAGTGTGGTGAAGCATTTGTACGGCAACGTCACGTTACTGATCATATCAGAAAGATGCATTCAGTTGAAGAGGGTCAGTATGTTACTGGAGAGTGTGTatcaacagaaataaatgaacGTGAGATGCAAGAGGAGCCACCTACAGTTAAAGAAGAGAATGAAGATGAGAATATTGATGTCTCAACTGTTACTCCAACAGCAGATCAACAATATGTTGGCTCCCCTAATCACCGTGCTCTCTCAGAACATGGAGAACAATTAGAAATCACGGAGGCAGGCTACCTACATGTGATTGGCGTGCATCTTCGCATGTTTCCGTGTTGCtttttgaaagtaaagtttGTACATCGGATTGTCCCCAGTACCGCCATTAGGAGTCCCGCTGCATATTTGGAGACCCACATTGTACAATGTCTTGGAATGAACGAGATATGCGAAGGAAGCAGGTTACGGAGACCCTCAGATTGTACGTACATGTGGATTATTGGCTTGCCGCTGCCGGATGGTGGTTCAGAACGGCGGAGAGGGACGTAG
Protein Sequence
SDSGQQSTVPHYDVTVEGLQLALMDRRNFSGISESFLNSGAANSGADTVTSSRLLSPPPAASSVATVVPGEADNSLESDALGTDPGSSWRSETPEDQTSPSPSSCATPNSATDVPDAELTFTVGVTEGTPYACQFCDKAFPRLSYLKKHEQTHSDQMPFRCEFCSRLFKHKRSRDRHIKLHTGDKKYRCTHCEAAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQNHKKDQQQQQQQQQQNGHNSNSSRASSNNTPSPGAACPSFRCLQCGETFRKPEELQGHMMTQHSVETRGSPPGPISRGLLGGLMLGDSPLARSPSRPLPFPTPKLACIYCTKDSFTTMEALQLHVQAMHGSILNGELRDFASLSQHQASPSPSLTPHRLLTSPNEGGSSSSNNHTVTSTSLMPYSCDLCTMRFGTVQGLQKHAVAVHGLMSPNNLGAGSKDHHNEAVGGTPGAGLFCVQCSLSFPSAPLFAEHYVLIHGSSSAAGGLMIPSSPAPEQLKPTDLSKKAHRHSQHHEDRSPPKRHKSSVENAQSQSVAMSDTPASASSMVNQYEHAGTLLCNQCSAALPDFESFRTHLKSHLEEAGGLRGLLGGGSDIIGMLSNQDSRVSSSKSPASNGALTCPHCGAKFSGADDHQAFEQHVATHFMATATEYGCQSCLKLFPKPDELQKHLMDIHAHHLYRCSLCKEMFDSKVAIQVHFAVKHSNECKLYRCTACPSSGTVFRSELDFGLHVRSAHAPLPLLTGAANKTPTQHPFRCLFCRLSFATELEMQFHLAAHSKQFHCPLCQEAFHVEFLLDKHMQTHHTSQNLSQQQKCPKNKTSGVTPSSTTHSNNNNSSGSSNSTSRNSNSNNEGNSSKKSDQTNNNCCCDICDRCDFGSEAELVAHRKLVHHIKSTTGKNGPVSLHCAYCSENCKSRTELENHMKTHSQGSSGSGKHKCNICDELCPSAAVLAEHKLTHCKVISGSMCTQCKATLVSEDQFYTHLQQHNSNNNNSSAQANTNSVHQQVVLPTPCVVCRQTLISDIEVRMHAKFHLKNTAALTAEPMYQCCLCLKQFEIQNLIAVSGGNGVVPSIQGATHVCKDCYHCHSKTSPSQQQQQQQQTSQQQQQPLGHPMQQQEQAFRCSECQVKFETSTALEAHLVTVHRKTYQCIKCQVSFETEREIQMHVATHLLTEGSSHECHLCRRLLATPLKLQAHLIEHTFAGCGSFTCYLCSAVFTAAQGLQQHMLEHGLAARPYDCSRCSLRFFFRAELDNHSYSHLEEDAVAMSNPSALLDGGDIASKAAYYHHLNTNGTYDSSNSDMHYYKTLVQETSKQHKHKSNKNHSSKGAVVLKCLECNKEFSSILGLQTHQRHHKHTSGTSKKVYTCNECGKEFGMPRNLSVHMRSHHEDHSGEERASEGMNIVTEELYQSEGNKPGSPHACSLCHKGFPDADTLGAHITLQHFRCPQCGEAFVRQRHVTDHIRKMHSVEEGQYVTGECVSTEINEREMQEEPPTVKEENEDENIDVSTVTPTADQQYVGSPNHRALSEHGEQLEITEAGYLHVIGVHLRMFPCCFLKVKFVHRIVPSTAIRSPAAYLETHIVQCLGMNEICEGSRLRRPSDCTYMWIIGLPLPDGGSERRRGT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00396691;
90% Identity
-
80% Identity
-