Csec004059.1
Basic Information
- Insect
- Cryptotermes secundus
- Gene Symbol
- -
- Assembly
- GCA_002891405.2
- Location
- NW:1538158-1547576[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 2.8e-05 0.00078 19.3 1.7 1 23 283 305 283 305 0.94 2 22 4.1e-05 0.0012 18.7 2.5 1 23 308 330 308 330 0.96 3 22 1.7e-05 0.00048 19.9 2.4 1 23 335 357 335 357 0.97 4 22 2.5e-05 0.00071 19.4 2.9 3 23 365 385 363 385 0.93 5 22 1.2e-05 0.00033 20.4 0.2 2 23 392 413 391 413 0.97 6 22 0.00015 0.0042 17.0 4.7 1 23 419 441 419 441 0.97 7 22 1.1e-05 0.00031 20.5 6.0 1 23 447 469 447 469 0.95 8 22 0.00016 0.0045 16.9 1.2 3 23 477 497 475 497 0.90 9 22 0.00031 0.0089 15.9 0.6 1 23 503 525 503 525 0.95 10 22 4.2e-05 0.0012 18.7 9.3 1 23 531 553 531 553 0.96 11 22 0.017 0.48 10.5 4.9 3 23 561 581 559 581 0.94 12 22 2.7e-06 7.6e-05 22.5 4.6 1 23 587 609 587 609 0.95 13 22 2.1e-05 0.00059 19.7 1.4 1 23 615 637 615 637 0.95 14 22 4.3e-05 0.0012 18.7 2.6 1 23 643 665 643 665 0.96 15 22 0.00026 0.0075 16.2 3.3 3 23 673 693 671 693 0.94 16 22 1.7e-05 0.0005 19.9 2.9 1 23 699 721 699 721 0.96 17 22 3.9e-06 0.00011 21.9 0.4 1 23 727 749 727 749 0.93 18 22 1.5e-06 4.3e-05 23.2 2.9 1 23 755 777 755 777 0.96 19 22 0.0034 0.097 12.7 7.6 1 23 783 805 783 805 0.97 20 22 1.1e-07 3.1e-06 26.8 0.9 1 23 811 833 811 833 0.98 21 22 3.5e-06 0.0001 22.1 0.2 1 23 839 861 839 861 0.98 22 22 1.6e-05 0.00047 20.0 1.5 1 23 867 890 867 890 0.96
Sequence Information
- Coding Sequence
- ATGAATGGAACAAGGACTCTGAACTTCAACAAAATATGCAGACTGTGCTTAAGTGATCATAAGACACTTTTGCCCCTCTTTAGTACTGTGGAAAATGTACAAGAAAAGATCCACACTATTTCACCAACAATAGAGGTGTATGCTGGAGATGGCCTGCCAGCCCAGGTATGCAAGGAATGTATCAGTCAGGTCAACACATCTTACAAATTCAAGCTGCAGTGTGAGAGGTCAAATGCTACTCTGCGACAACACTTAAGCAACCAGCAGCCACATGATCCACCAGTTCAGGTTGTTCTCAAAGAAGAGCCTTCATTGTGTGATGATGACACAGAGTCAGCTAATGAATTGTATCCATCAGCTGGCAACAGGAACCAAGAAAATCCTCTTGGCAGTGATACAGAGGGTGCGGCTGCTCTTGAAGATGATGATTCAGACTCAAGGGGTGCAAGCTTCAACGATGGTTCTGTGAGCCCTGATGAAGATGTGATAGAGCCAGACAGTGAAGTCAATACTTGTTCTTGGCGCAAAACTAAAACAAGTGATGAATCATTATGTAAGAAGTCATCACGGGACTTGAAGAATGCAGGCATCAGTGTGCCGTGTCCAGACAGGAGAAATACACCACCACCCAGAACTTCTGTACACAGCTTGGAACATAAAGACATCGGTGCTCCAGATCACTGCAATAACAAGTCAACGAACTGCACACCATCACCAGGCACTTCCCTACAGGACATGAAGCATGAAGACATTGTTGGCACAGCACATCCATGTATTAACAAAGGCAGAAGCACTGCATCTCTGAACTCTTTCCTTGGAGTGGATGGTGGTGAGGAAATTGAACAGTACATATGTCATGTATGCAACAAGGAATTTAGCAACAAGCAAGAGTTGGAAAAGCATTTTGTGGTGCACCCAAAGTACAATTGCTCTGACTGTGGGAGTTCTTTTAAGCACAAATCAAGCTTAACAAGTCATACGGCATTACATTCCCAGGTTTCGTTCTCATGTACAGAATGTGAGAAAATATTCCATTCCAAATCAAACCTCACCCAGCACCTTGCATCCCATTCTGAGGCTAGGCCACACCTCTGTTCTCTCTGTGGTAAATCTTTCAAATATAAATCAAATCTTATCCAACATACAACTCTACATGTTAGAGAGATGCCAGTACAGTGTAATGTTTGTGACAAGAAGTTTGACTCTAAGACTGACCTCATGATTCACATAATTTCTCACTTAGAGGAAATGCCACACCAATGTCCAGAATGTGGCAAATGCTTCAGTTGTCAATCTCAACTCTCTGAACATCAGGCTATTCatgaagaaacaaaacaacactGTTGCTCCATGTGTGGTAAATCATTCAAAACAAAGTACAATCTCACTACCCACCAAGCACTGCATACTAAGGATAGGTCACACCTTTGTACTGTGTGTGGTAAGGgttttaaatataaatctaACCTGTTAGAGCACAGTGCTTTACATGCAGACGACAAACCTTTCCTTTGTACTCAGTGTGGTAAAGCCTTTGGTGGCAAATCCAAGTATACTAGCCACCTTGCCACACACTCAGAAGACAGGCCCTATCAGTGCTCTACATGCGGCAAGTGTTTCAAACATAAATCAAATCTCTGTAATCATAAAGCATTACATGTGGAGAATGGACCCCATCTGTGTAATGTATGTGGTAAGTCTTTCAGTTGTAAGTCAAAATTCACTAGCCACGTTGCTTCGCATTCCGAAGAAAGGCCACATCAGTGCCCTGTGTGTGGGAAAAGTTTCAAATACAAATCCAATCTTTGTAACCACAAAGCATTACATGTAGAAAATGGCCCACATGCGTGTACCTTATGCAGTAAATCCTTTGGTACTAAGTCAAATCTGATCAAACACACTGCAATACATTCTGAAGAGAGACCATTTCAGTGCTCTGTATGTGGCAAAGGATTTAAATACATGTCCAATCTTTGTAATCACAAAGCTTTACATATAGAGAATGGTCCCCATCTCTGCACAGTATGTGGTAAGTCTTTTAGTTGTAAATCAAATCTAATGAAGCATGTGGCAGTGCATTCAGAAGAAAGACCATACCAATGTCCAATGTGTGGCAAGGGATTTAAGTACATGTCTAATCTATGTAATCACAAAACATTACACACACAGAAAAGTCCATATCTGTGTGCAGTATGTGGGAAATCATTTAGCAGTAAGTCCAATCTGATGACTCACTCTGCCTCTCATTCCGATGATAGGCGTCATCAGTGTTCCATATGTGGGAAGTCATTCAAGTTTAAATCCAGTCTTACATCTCACCAAGCTCTCCATTCACAAGACAAGCCCCACCACTGTAGTGTGTGTGGTAAAGCTTTCAAATGCAGAAGCACGTTCATAAACCATATGAGAATGCATACTGGAGATCGGCCACACCAGTGCCCTGTCTGCGGCAAGCAGTTCACCACACTGGGCAATCTTATTGTGCATAGGAGAACACACAGTGGAGAAAAACCATACAGATGTGAGACATGCTTGAAAGCATTTAGTGACAAAGGTAATCTCACAGCACATCAAGCTGTTCACTCAGGAGAGAAACCACACATCTGCCCCACATGTGCTCAACCTTTTAAGTATCCTAGCAGTTTGAAACGACATATTAGAAAACGTCATGGAGGTGAAGGGCTACCTCTCCCTAAAGTAAATGTGTACTAA
- Protein Sequence
- MNGTRTLNFNKICRLCLSDHKTLLPLFSTVENVQEKIHTISPTIEVYAGDGLPAQVCKECISQVNTSYKFKLQCERSNATLRQHLSNQQPHDPPVQVVLKEEPSLCDDDTESANELYPSAGNRNQENPLGSDTEGAAALEDDDSDSRGASFNDGSVSPDEDVIEPDSEVNTCSWRKTKTSDESLCKKSSRDLKNAGISVPCPDRRNTPPPRTSVHSLEHKDIGAPDHCNNKSTNCTPSPGTSLQDMKHEDIVGTAHPCINKGRSTASLNSFLGVDGGEEIEQYICHVCNKEFSNKQELEKHFVVHPKYNCSDCGSSFKHKSSLTSHTALHSQVSFSCTECEKIFHSKSNLTQHLASHSEARPHLCSLCGKSFKYKSNLIQHTTLHVREMPVQCNVCDKKFDSKTDLMIHIISHLEEMPHQCPECGKCFSCQSQLSEHQAIHEETKQHCCSMCGKSFKTKYNLTTHQALHTKDRSHLCTVCGKGFKYKSNLLEHSALHADDKPFLCTQCGKAFGGKSKYTSHLATHSEDRPYQCSTCGKCFKHKSNLCNHKALHVENGPHLCNVCGKSFSCKSKFTSHVASHSEERPHQCPVCGKSFKYKSNLCNHKALHVENGPHACTLCSKSFGTKSNLIKHTAIHSEERPFQCSVCGKGFKYMSNLCNHKALHIENGPHLCTVCGKSFSCKSNLMKHVAVHSEERPYQCPMCGKGFKYMSNLCNHKTLHTQKSPYLCAVCGKSFSSKSNLMTHSASHSDDRRHQCSICGKSFKFKSSLTSHQALHSQDKPHHCSVCGKAFKCRSTFINHMRMHTGDRPHQCPVCGKQFTTLGNLIVHRRTHSGEKPYRCETCLKAFSDKGNLTAHQAVHSGEKPHICPTCAQPFKYPSSLKRHIRKRHGGEGLPLPKVNVY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00370364;
- 90% Identity
- -
- 80% Identity
- -