Csec007856.1
Basic Information
- Insect
- Cryptotermes secundus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_002891405.2
- Location
- NW:2020034-2072885[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 5.1e-114 6.3e-110 366.6 35.8 1 300 127 437 127 437 0.92 2 3 0.0081 1e+02 1.5 2.7 120 171 435 486 435 491 0.89 3 3 0.082 1e+03 -1.8 5.4 133 166 469 502 451 511 0.55
Sequence Information
- Coding Sequence
- ATGAGTACTGTATGTGCCAGGGACGTAAATGACGGTGTGGAAACATCGGTCGGCGTCAGTGAAGAAACCACTGTCAGAATAGCGAATATGAACCATGTAGAAATAGGCAAGGATGGCGTTACTGCAGGAGGGGAAAAACACATACATCAGACTGGAGTAAGGGATGCAAAGGGAGATACTGGGGAGAACCATTCTAGTAGTTGCGTGGGTGATTATTGTGATCAGATGTCGGTCATATCACCAGCTGCAAAAGTGAAAGGTGTTAAAGAGAACACCAGTAACAGCGATAACAGGAACAGGACTACCAGTGAAACTTGGACCACCGAAAATACAGAAGATGACTGCATTGTCGATTTCCTTGATAAGAGCAATGAAAAGGCAGAGGCTCGGCTAGCAGCCAGAAGGCAAGCAAGAGCTGAGGCTAGGGAAATCCGCATGCGAGAACTAGAGAGGCAACAGAAAGAAATTGAAGAGAATGTTGACAGCGTGTATGATATGTACAGAGATCCAACATGTCGCTCTGCAAGAGTTGCTGCCACTGTCAGCAGCACAAGGAACACATCGCTGGGTGGAACCAATAGCTATCAGTCAAGTCGTCGCAGTTCAGAGGATTCACTTGAGGAGGGCATTAGTCTCAGAGATGTGCGGCAAGAGCTGAAGGAGGTGGAAGAGAAATTCCGAAAGGCGATGATACAGACTGCTCAACTTGACAACGAGAAGTCATCACTCACTTACCAGGTGGAGCTCCTGAAAGATCGGCTGGAGGATTTGGAGGAAGCCCATTCACAACTACAACGAGAGCACAGAGAGAAATGTAGGGAGCATGACCAACTGAAGCGGGCAACAGTGAAGCTGAAAGAGGATCTTGAGATGTACAAAGCTCAGCTGGAAGAGAGAGATCGTCTCATTCAGGAGCAAGGCCTGATGATAGTAGGAGATGATCAAGTGTCCAGTGAAGAGGAGGGCAACAGTGTAGAGGATAGTAGTAGTAACATACCAAAACGGACGCCAAGGAGAGCTCTTGTCTCAGTTGAGTCTGCAGAACTTCTACAAACTGCTGGAGGAGGCTCATTAGATGTTAGACTGCGGAAGTTTGCTGAAGAAAAAAGTGAGCTTTTAGACCAAGTACGGCACCTAAAATTAGAACTGGAGGAAGAGAGAAGCAGACACAAGTCAGACAGACAACGAGGGTCTAGCAGTGTTAGTCTCAATGGGCCAGACACAGAGCTGGTGGATATTCAGAGAGAAGCAAACAAGCAGCTAGGGGACTATAAGTTCAAACTTCAGAAAGCAGAGCAAGATGTGTCAACATTGCAGGCCAATGTAGCACGCTTAGAAAGTCAAGTTATAAGATATAAATCTGCGTCAGAGACAGCAGAGAAGGTTGAAGATGAACttaaagtggagaagagaaaattacaaaGAGAGCTGCGTGAATCGCAGGCACGAGTGGAAGAGCTAGAGACTTCCAATACCCACCTTCAGCGGAGGCTTGACAAGCTGAAGAATGCCAAATCTGCACTTCTTAAAGAACTTTGA
- Protein Sequence
- MSTVCARDVNDGVETSVGVSEETTVRIANMNHVEIGKDGVTAGGEKHIHQTGVRDAKGDTGENHSSSCVGDYCDQMSVISPAAKVKGVKENTSNSDNRNRTTSETWTTENTEDDCIVDFLDKSNEKAEARLAARRQARAEAREIRMRELERQQKEIEENVDSVYDMYRDPTCRSARVAATVSSTRNTSLGGTNSYQSSRRSSEDSLEEGISLRDVRQELKEVEEKFRKAMIQTAQLDNEKSSLTYQVELLKDRLEDLEEAHSQLQREHREKCREHDQLKRATVKLKEDLEMYKAQLEERDRLIQEQGLMIVGDDQVSSEEEGNSVEDSSSNIPKRTPRRALVSVESAELLQTAGGGSLDVRLRKFAEEKSELLDQVRHLKLELEEERSRHKSDRQRGSSSVSLNGPDTELVDIQREANKQLGDYKFKLQKAEQDVSTLQANVARLESQVIRYKSASETAEKVEDELKVEKRKLQRELRESQARVEELETSNTHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -