Csec004224.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cryptotermes secundus
Gene Symbol
PAXBP1
Assembly
GCA_002891405.2
Location
NW:160521-188657[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 7.3e-29 4.5e-25 88.2 0.2 2 272 561 772 560 775 0.93

Sequence Information

Coding Sequence
ATGTCGTTGTTTAAGAAGccgaagaaaaatataagaagaagAGTTATTGGAAGCATTGAagatgaagaaggaggcgatgaaaatgaGAAAAAGATGGAAGtcgaagaagaggaaaatatcGCTCAACCACAAACTAATGTAACAACGAAAATAAAGGACAAGAAAAAGGAAAGGCGGAAGCAAACCGTCCTGAGTTTTGAAGAAGAACTGAATGAAGctGATGATGGAGAAGTGTTCCAGGTGAAGAAGTCAACACAGAGTAAGAAGATCATGAAGCTGCTTGACagagagaggaagaagaaaaaggaggtGAAAAAAGAAGGAGAGAAAATAGAAGCTgctgaacatgaaaataaaatggagGATCCATCAGAACTTGTGGTGGTTGTGAAGCCAACACATAAGACAGCAGTGGGTAACATTCTCAATGGACGGGCAGCAGAGGTGGCAGGCTGTGAGGGCAACAGTTcttcagatgatgatgatgatgatgatgatggtgatgctCACCCACGATTCTCACGACCAGACCACGTGAAACTGCTCTTGGAAAGTGGCCGGATTCCAGACGCAGCCATGATCCACGCTGCACGCAAACGTAGACAGCTGGCTCGGGAGATGGGGAATGACTACATCCCAATTGAGAACAATTCCATCAACAAGAAGCCTGATGCAGGGAAGCGATTGATGCGcgaggaggatgaggaaggGAGCGATGAAGAGAGAATTACAATGGCAGTGAACACGGCTGCCAGAGACCGGGAACGGCGTAGGGAAGCATTCATGGCAGCTCAGGACACAGATGCAGGGGAGGAGAGTGGAAAGGGAGAGGATGATGAATGGGAGTCGCAACAGATCAGGAAGGGTGTGAGTGGTGCGCAGTTGGCAATAGTGCAGCAGGAGTCTCTGCATTTTCACCAGTATGCTGTGGTTCCCATGATGCCTGCTCCATTGCCTGCTCCCAGCCTGACGATGGAACCCATGCCGATTGCTGCAGGGTGTCCCCCAATGATTCTGCATGGTGTTGGCCCCCCATCACCCACACAGGCAGACGCAGCTATGCCACAAGCCATTGCGAGCAAGTTGCGCGACAGGTTGGCAAGCCTACAGGAACTTCATAGTCGTCACCAGATGGACCTGGCCCGTGTGACTGATGAGTTAGCATCGACAAAGGCAGAGCATGAACGCCTGGAGACGGAGCAGCCTGTGCTGGCCCAGAAGTTTCGCTACTACCAAGAGTTGCGTGGGTATGTGACAGACTTGGTAGAGTGTCTAGATGAGAAGGTATCTGTCATCGCAGCTCTGGAGCAGCGCATGCTAAGTTTGTTGAAGAAGCGGGCAGATGAGCTGATGGAGCGGCGACGGCAGGATGTGCGGGATCAGGCAGAGGAGCTTGCACCCTCCATGGCAGCCAGGTCTTGTCCACCATCTGGTCCGAAGCGTAGTCGTGAGGAGGAAGAGGCGCACACTAGACGAGCAGCGGAAAGGGAAGGGCGGCGCACTAGACGGCGTAGAGCCAGGGAAATGAAGAGTGGCAGCACTGCAAAACATGTAGATGGAATGTCTAGTGACGACGAGATGACGGAGCTTGAGGCCACAGCCTTCCGGAATCAGAGAGATACGATCGAGTCAGATGCGCGACTGGTATTCTCAGATGTGGTGGATGAATTCTGCTCTGTACGTGGTGTGGCTTCACGGTTTGAGAGTTGGCGCAACACGGATGCTGTTGCATATCAAGAAGCATATGTCAGCCTGTGCTTGCCCAAGGTCTTGGGGCCACTTGTGCGTCTCAAGATGCTCTTGTGGAACCCTCTACAGGATGGGTGCTTGGAGTTTGAGCGTGCCAAGTGGTATGACACGCTGATCCTGTACGGGCTGAAGGAGGGTGAGACGGAGGACGGGCTGAAGCAGGATCCAGACCTGCAGCTGGTGCCCATTATTATAGAAAAGGTGCTTCTCCCAAAGCTGACTCAGTTGGTAGAGGCAGTCTGGGACCCTTTGTCCACATCACAGACGCTGCGTTTGGTGGGGCTTCTGAACCGCCTCATGCAGGAGTACCCCACAATGCTGCCCTCTAGCAGAGCGCTCGAACAACTCGTAACTGCTATCATTGCCAAAATGAAGTCTGCAGTTGAGAACGACATGTTCATTCCAATATACTCCAAGCAGGTGCTTGGTGGCAGTGGCGGAATCTTCTTTCAGCGCCAGTTTGGGATGGCAGTGAAATTGCTGCGGAACCTGCTGGCGTGGCAGGGTGTTGTGGCTGACCGTGTGCTGCGCGACGTGGCACTTGGCTCACTGCTGAATCGGTATCTGTTGGCAGCCCTGCGCACCTGTGAGCCTGTGGATGCTGCAGAGAAGTGCAGCATGATTGTGTCTACATTCCCATGCTGGTGGTTCCAGTCACAGCAGCAGGGAGACTGTGTGTGTCTGCCACAGTTGCAGATGTTCACTGCTCAGCTGAAAACGATCGCTCAGTGTCTGGATGTCTCAACACCAGCGGGCAGGGAGGCGATGGAGCAACTGGCAAAGATCCTGCAGACGCTTCAGGCACAGTGA
Protein Sequence
MSLFKKPKKNIRRRVIGSIEDEEGGDENEKKMEVEEEENIAQPQTNVTTKIKDKKKERRKQTVLSFEEELNEADDGEVFQVKKSTQSKKIMKLLDRERKKKKEVKKEGEKIEAAEHENKMEDPSELVVVVKPTHKTAVGNILNGRAAEVAGCEGNSSSDDDDDDDDGDAHPRFSRPDHVKLLLESGRIPDAAMIHAARKRRQLAREMGNDYIPIENNSINKKPDAGKRLMREEDEEGSDEERITMAVNTAARDRERRREAFMAAQDTDAGEESGKGEDDEWESQQIRKGVSGAQLAIVQQESLHFHQYAVVPMMPAPLPAPSLTMEPMPIAAGCPPMILHGVGPPSPTQADAAMPQAIASKLRDRLASLQELHSRHQMDLARVTDELASTKAEHERLETEQPVLAQKFRYYQELRGYVTDLVECLDEKVSVIAALEQRMLSLLKKRADELMERRRQDVRDQAEELAPSMAARSCPPSGPKRSREEEEAHTRRAAEREGRRTRRRRAREMKSGSTAKHVDGMSSDDEMTELEATAFRNQRDTIESDARLVFSDVVDEFCSVRGVASRFESWRNTDAVAYQEAYVSLCLPKVLGPLVRLKMLLWNPLQDGCLEFERAKWYDTLILYGLKEGETEDGLKQDPDLQLVPIIIEKVLLPKLTQLVEAVWDPLSTSQTLRLVGLLNRLMQEYPTMLPSSRALEQLVTAIIAKMKSAVENDMFIPIYSKQVLGGSGGIFFQRQFGMAVKLLRNLLAWQGVVADRVLRDVALGSLLNRYLLAALRTCEPVDAAEKCSMIVSTFPCWWFQSQQQGDCVCLPQLQMFTAQLKTIAQCLDVSTPAGREAMEQLAKILQTLQAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00370222; iTF_01566976;
90% Identity
-
80% Identity
-