Csec009573.1
Basic Information
- Insect
- Cryptotermes secundus
- Gene Symbol
- bab2
- Assembly
- GCA_002891405.2
- Location
- NW:1641937-1666753[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6e-12 9.3e-09 34.4 0.0 2 38 433 470 432 475 0.90 2 4 1.5e-13 2.3e-10 39.5 0.1 1 39 486 524 486 527 0.95 3 4 1.8e-18 2.8e-15 55.2 0.0 1 45 541 586 541 586 0.97 4 4 4.1e-19 6.4e-16 57.3 0.1 1 43 593 636 593 637 0.96
Sequence Information
- Coding Sequence
- ATGTTGGCATTACATTGcaTCATGGCAGGCCAGCATTACTGCCTGCGCTGGAATAATTATCAATCCAATATGACATCGGTGTTCCATCAACTTCTACGCAATGAGGCGTTTGTTGATGTTACTTTAGCATGCAATGACTCATCCCTCAAGGCACATAAGGTTGTGTTGTCTGCATGTTCGTCGTACTTTCAGAAGCTGCTCCTAGAAAATCCATGCAAACATCCAACAATAATTATGCCACAGGATGTATGCTTTAGTGATTTGAAGTTCATTATTGAGTTCGTTTATCGTGGAGAGATCGACGTGTCTCAAGCTGAATTACAGTCACTGCTGAAAACTGCCGACCAGCTGAAGATCAAGGGCTTGTGTGAGGTGCCTGAAGGAAGGGAAGGGAATGCTGGTTGTGGAGCTGCTGAAGTAACGCCGCTTCCTATCTTATCACGGCGTTCATTCACGAAGCTACGCCGGTTATCTGGTACCAAACGCCAGCGCGGGCCAGACATGGTGCGAAGAGCAATCTTTAAAGAATGTGACCATAATCACCACCtccaacagcagcagcagttgcAACCACAGCCTTTGTCAAGTGTTGGTACTCCCACTGGGACATCTGTTCTTGATCTTGGTGTAACAGAGCTGTCTGCTCGTCCAGAAGGCCATGTTCCCGAATGTGTCACCGTGGCAACGTCGACTGAAGATGATAGTCCTGAAGTGCCAGTTGTAGTACTGGAAAGTAAAGTGCCCCAGCATCAGGTGTTATGTGTTTCATGGCAGTTGGGGAATGGGGCTGTGCCGACAGCGGGGGTGATGGCGCCCCACGGGGGGCTCTCGCAGCCACCACAGATCGTAATGGAAGGGACAAGCCACAGTTCCAGCAACGCAACAGATGTGGACATCCCCCCTGAGGCCCAGCCCCCCGCTCCGGCAGCCACACTAGTCAAAGACATGGATATGAGCGAGTGCTCAGCCCATGACAGAACCAGAGACTTAACAGACGTTTCTGTTGCAGATACATCAGAAGGTGCTAGAGATGAGGAGAATGTAAAGGTCAAGTTTGAGACATTGCGAGCAATGGAGCAAGCAGAAACAATTGATATTGACAGTCACATGTCTGATAGGAGTCCCACCTACCAGAACCTCAATGGTTCTGGTCTATTGCAGCAAAGTGTGGGTGAAGATGAACACACAATGCACACCATGATGATAACACCGGAACTCCTGGGGCTTATACCATCGTCATCAGGTCATTCAGATGTGAGCAGTGATGCTGGGAAAGGTGGACCAAAGACATGGTCTCAAGAGGACATGGAACAGGCTCTGGATGCCCTGCGGAACCACAACATGAGTTTAACTAAGGCGTCCGCAACTTACGGTATTCCTTCCACCACGCTGTGGCAGCGAGCCCATCGTATGGGCATTGACACACCCAAAAAGGAAGGCCCCACAAAATCGTGGACAGAAGAAAATCTTAACAATGCACTGGAAGCGTTACGAACTGGAACAATTTCTGCCAACAAAGCTAGTAAAGCGTATGGTATACCAAGCAGCACCCTGTACAAGATAGCCCGTCGTGAGGGAATCCGTTTAGCTGCACCGTTCAACGCAGCACCTACTACCTGGAGTCCAGATGACCTGGAACGAGCTTTAGAATCCATCCGTTCAGGGGCCACATCAGTCCAGAGAGCATCAACAGAGTTTGGTATCCCAACTGGAACATTATATGGCCGTTGCAAGAGAGAAGGCATAGAGCTGTCACGTTCAAATCCAACTCCGTGGTCAGAAGACGCCATGGGAGAGGCCCTGGAAGCTGTTCGTGTTGGACATATGAGTATTAACCAAGCAGCCATCCATTATAATTTACCTTATTCATCTTTGTATGGACGATTCAAGAGAGGTAAGTATGAAGCCGAAGGACACCATCCAGATGACGGGCCTTCTCCTCCACCTCCACCACCACCTCAAGTGATGGTGGTACCATACCAGCAGTCAcctcaacagcagcagcagccgcCCCCACACAATCAGCACCTCCCGCAGCAACCTCCACAACATCATTCACCTCAGCAGCACCCTATGTACCAGCAACACAGCAATAGTTGA
- Protein Sequence
- MLALHCIMAGQHYCLRWNNYQSNMTSVFHQLLRNEAFVDVTLACNDSSLKAHKVVLSACSSYFQKLLLENPCKHPTIIMPQDVCFSDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPEGREGNAGCGAAEVTPLPILSRRSFTKLRRLSGTKRQRGPDMVRRAIFKECDHNHHLQQQQQLQPQPLSSVGTPTGTSVLDLGVTELSARPEGHVPECVTVATSTEDDSPEVPVVVLESKVPQHQVLCVSWQLGNGAVPTAGVMAPHGGLSQPPQIVMEGTSHSSSNATDVDIPPEAQPPAPAATLVKDMDMSECSAHDRTRDLTDVSVADTSEGARDEENVKVKFETLRAMEQAETIDIDSHMSDRSPTYQNLNGSGLLQQSVGEDEHTMHTMMITPELLGLIPSSSGHSDVSSDAGKGGPKTWSQEDMEQALDALRNHNMSLTKASATYGIPSTTLWQRAHRMGIDTPKKEGPTKSWTEENLNNALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWSPDDLERALESIRSGATSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGHMSINQAAIHYNLPYSSLYGRFKRGKYEAEGHHPDDGPSPPPPPPPQVMVVPYQQSPQQQQQPPPHNQHLPQQPPQHHSPQQHPMYQQHSNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00209711;
- 90% Identity
- iTF_00209711;
- 80% Identity
- iTF_00396415;