Csec001221.1
Basic Information
- Insect
- Cryptotermes secundus
- Gene Symbol
- retn
- Assembly
- GCA_002891405.2
- Location
- NW:564490-1104709[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6 1.2e+04 -4.1 0.0 70 82 167 180 160 180 0.70 2 2 8.8e-26 1.8e-22 79.0 0.0 2 89 187 272 186 272 0.96
Sequence Information
- Coding Sequence
- ATGGACCCCCACGACAGCGACGTGGATGGGAGCATGTCAAACAATGACGAAGAGCTGAGTGAGGCGGAGTTGCAAGATGAGGACAGCGAGGACGCTCTCTCTAGACTTCCGGTGGAGGACGTGGGCGACCCGGAGGTTCTAGCCAAGCTCAAGCAGCAGGAGCGAGAGGAACGCGAGGAGATCGAGAGGGAATTGAAGGCTCACGCCCAGTCACAATCGCACCTTCAGGCTCCATCCCCCAGACACAGCCCGCGGGAACAGCCTGCCACCCCGTCTCCCAACGTCATGATTCCACCCCCAGCCTTCTCCTTGCCACTGCCGTTTCCTTTTCCACACCCATCGGCCGCCTTCCTGCCTCCCATAAGCGCTGCCTCCGCAGCGCCTCCCATCTCGGCCCCAACGCCCAGTTTCCCGCCGCCCTCGACAGCCGGCGCAACCCTTCAGAACTCCATCTCCTCGGGGTCGTCACACTCCTCCGAGTCATCCTCGTCCTCGCAGCAGACGTGGAGCTTCGAAGAGCAGTTCAAACAGTTGTACGAGATAAATGATGATCCCAGAAGAAAGGAATTCCTGGACGACCTGTTCAGTTTCATGCAGAAGCGGGGGACGCCCATCAATCGATTACCAATCATGGCGAAGTCCGTCCTAGATCTGTATGAGCTCTACAACCTAGTCATCGCCCGCGGAGGTTTAGTTGACGTCATCAACaagaaactgtggcaagaaatcATCAAAGGACTTCATCTTCCTTCGTCAATCACATCAGCAGCTTTCACGTTAAGGACACAATACATGAAGTACTTGTACACGTACGAGTGTGAGAAGCGACAGCTAAGCACGCCAGCAGAATTGCAAGTTGCCATCGAGGGCAATCGCCGGGAGGGACGTCGGAGCagttatggtacatattccgaGATGGTTCAGCGAAGTCCAGTGCCAAACCTGCCACCCGCCCACCCGTCTCAGATGTCACCTCTGAGCCTGGTAACAAGCGGCAGGCCTGCTATGAACGGCAACTCAAATCACCATCCTGCCTCGCATCCACAACCACACGGACAGCCGCTGGTACCTGGTTCTGTTCCTGGAATGGTTCCTTCAGAGTTTGAAACTAGGATGATGGTGGATTATGTCAAGTATCTTCGTAAAGAGCTCAGCGGTTCTACAGCTGCTGGCAATGGGAGCAGTAACAGACAAGGATCAAGCTCACCTCCACCCTCAACTTCACCCCAAGACTCTGCCGCCCTAAATGCTTTGGGCATGTCCCGGCTTACACTGTGGAACCTCTGTAACAACAACACTTCTGTGGTACCACCCTCACAGGAGCCCCAGAGGGAAGCCCTAAATCTGGAAGTACGGGAACAGCAAGCAAGGGCCCTACAGGAATCTATTGCAACCCGAGAAAGCGATGAGTCTCTGGGCCCTCCTCCTCCCAAGAGGATAATGTCATCAGAAGACAATATGAACAAGCACAGTGGAGTTGCAGGCACACATATAAAGATAGCCAGCAGAGgagatgGGCGAGCCGGTATCGACAACTCTTTAGTGGTGAGCATGGAGATTAATGGTGTCATGTACCAAGGTGTTTTGTTTGCACAGAGTGCAAGGACTCGCATGACGTAA
- Protein Sequence
- MDPHDSDVDGSMSNNDEELSEAELQDEDSEDALSRLPVEDVGDPEVLAKLKQQEREEREEIERELKAHAQSQSHLQAPSPRHSPREQPATPSPNVMIPPPAFSLPLPFPFPHPSAAFLPPISAASAAPPISAPTPSFPPPSTAGATLQNSISSGSSHSSESSSSSQQTWSFEEQFKQLYEINDDPRRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYTYECEKRQLSTPAELQVAIEGNRREGRRSSYGTYSEMVQRSPVPNLPPAHPSQMSPLSLVTSGRPAMNGNSNHHPASHPQPHGQPLVPGSVPGMVPSEFETRMMVDYVKYLRKELSGSTAAGNGSSNRQGSSSPPPSTSPQDSAALNALGMSRLTLWNLCNNNTSVVPPSQEPQREALNLEVREQQARALQESIATRESDESLGPPPPKRIMSSEDNMNKHSGVAGTHIKIASRGDGRAGIDNSLVVSMEINGVMYQGVLFAQSARTRMT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01566760;
- 90% Identity
- iTF_00370039;
- 80% Identity
- -