Cfor011606.1
Basic Information
- Insect
- Coptotermes formosanus
- Gene Symbol
- retn
- Assembly
- GCA_013340265.1
- Location
- BLKM01000221.1:1291520-1710948[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.6e-26 1.6e-22 79.2 0.0 2 89 191 276 190 276 0.96
Sequence Information
- Coding Sequence
- ATGGACCCCCACGACAGTGACGTGGATGGGAGTATGTCAAACAACGACGAGGAGCTGAGTGAAGCCGAGTTGCCAGATGAAGACAGTGAAGACGCTCTGTCTAGACTTCCGGTGGAGGACGTGGGCGACCCTGAGGTCCTCGCCAAGCTCAAACAACAGGAGCGAGAAGAACGTGAGGAGATTGAGCGGGAATTGAAGGCGCACACGCAGTCACAATCGCACCTTCAGCCCCCGTCTCCCCGGCACAGCCCCCGAGAACAGCCCCCTACTCCCTCTGCCAACGTTATGGTACCGCCACCGCAATTCTCCTTACCACTGCCTTTTCCATTCCCACACCCATCAGCGGCGTTCCTGCCTCCCATGAGCGCTGCGACGTCCGCACCACCCCCTATTGCAGCTCCGACACCCACCTTTCCGCCGCCCTCGGCAGCTGGCGCATCCCTCCAGAACTCGATCTCCTCCGGGTCGTCACACTCTTCAGAGTCGTCCTCATCCTCGCAGCAGACATGGAGTTTCGAGGAGCAGTTCAAACAGGTGCGTCAGTTGTACGAGATAAACGACGATCCTAAGAGGAAGGAATTCTTGGACGACCTTTTCAGTTTCATGCAGAAGCGGGGGACACCCATCAATCGACTACCAATTATGGCGAAGTCCGTCCTAGATCTATACGAGTTGTACAATCTAGTCATCGCCCGCGGAGGGCTCGTTGACGTCATCAACAAGAAACTGTGGCAGGAAATCATCAAAGGACTTCATCTTCCTTCGTCCATCACATCAGCAGCCTTCACGCTACGAACACAATACATGAAGTACTTATACACGTACGAGTGCGAGAAGCGGCAGCTGAGCACACCAGCAGAACTGCAGGTTGCCATTGAAGGGAATCGCAGGGAGGGGCGTCGCAGCAGCTACGGAACATATTCCGAGATGGTGCAACGGAGTCCCGTGCCCAGCTTGCCACCGAGCCACCCTTCACAGATGTCACCACTGAGCCTCGTGACAAGCGGCAGACCTGCCATGAATGGCAACTCTAATCATCACCCTTCGTCTCATCCTGCAGTACACGGGCAACCCCTGGGGGCAGGTGCTGTTCCTGGAATGGTTCCATCAGAGTTTGACACCAGGATGATGGTGGATTATGTCAAATATCTTCGCAAAGAATTCGGCAGTTCGACAGCCTCTGGTAATGGCAGCAGTAACAGGCAAGGTTCAAGCTCACCCCCCTCCTCAACATCGCCCCAGGAATCTGCCCTAAATGCTCTGGGTATGTCCCGGCTTACACTGTGGAATCTTTGCAACAACAGTACGTCTGTAgtaccgccttcacaagagccccaGAGGGAAGCCCTAAATTTGGAGGTTCGGGAACAACAAGCAAGAGCACTGCAGGAATCCATCGTGAAAAGGGAGAGTGATGAGTCTGTGGGACCTCCTCCTCCCAAGAGGATAATGTCatctgaagaaaatatgaacAAGCATAGTGGTGTTGCAGGCACACACATCAAAATTGCCAGTAGAGgggATGGGAGAGCAGGTATGGACAACTCATTAGTGGTGAGCATGGAGATCAATGGTGTTATGTATCAAGGTGTTTTATTTGCACAGAGTACAAGGACACGGATGACATAA
- Protein Sequence
- MDPHDSDVDGSMSNNDEELSEAELPDEDSEDALSRLPVEDVGDPEVLAKLKQQEREEREEIERELKAHTQSQSHLQPPSPRHSPREQPPTPSANVMVPPPQFSLPLPFPFPHPSAAFLPPMSAATSAPPPIAAPTPTFPPPSAAGASLQNSISSGSSHSSESSSSSQQTWSFEEQFKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYTYECEKRQLSTPAELQVAIEGNRREGRRSSYGTYSEMVQRSPVPSLPPSHPSQMSPLSLVTSGRPAMNGNSNHHPSSHPAVHGQPLGAGAVPGMVPSEFDTRMMVDYVKYLRKEFGSSTASGNGSSNRQGSSSPPSSTSPQESALNALGMSRLTLWNLCNNSTSVVPPSQEPQREALNLEVREQQARALQESIVKRESDESVGPPPPKRIMSSEENMNKHSGVAGTHIKIASRGDGRAGMDNSLVVSMEINGVMYQGVLFAQSTRTRMT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01566760;
- 90% Identity
- iTF_00396085;
- 80% Identity
- -