Csec009614.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cryptotermes secundus
Gene Symbol
Rfx2
Assembly
GCA_002891405.2
Location
NW:12283-118616[-]

Transcription Factor Domain

TF Family
RFX
Domain
RFX domain
PFAM
PF02257
TF Group
Basic Domians group
Description
RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 8 1.2e+04 -4.2 0.0 22 44 224 246 221 252 0.66
2 2 1.7e-37 2.6e-34 117.1 0.1 3 77 370 444 368 446 0.97

Sequence Information

Coding Sequence
ATGTTCTTTATATATAACGGTGATGTGATAGTTTATAACAGCATTCTGGGTGCGAAGAAGGTGACCATCGCATTGGCACGAAAGGGGAGAGTCAGAACGAGAGGAACTGACAGTGGTGGGCTTGTTGCCATGGCAACGGCACAGCCAACATTCAGTATGGCCACTGCAGCATCCACAGCAGCGGCAACAACAGCAGCGACAGCCTCACCTTCTGATTTGGTGGGAGGAGTGGTTGGAGGAGGTGGTAGTAGTGGGGGAGGAGGGAATCAACAAGGGCAGCAGGGAGCCAGTCCTGTCGCAACTGTCACAGTTGTTACCAGTCCTCCAAGTCAGCAGCAAACCTCTCAGCAGGCAATTGTCTCAGCAAATTCGGTCTCCATTACTGCAGTCACTCATCATACTCTCCAGCAGAACGGTAGTGTGGATGGTTCGTTGGACAGCCCAGGTGATTCATCCAATGGTGGTGGTGCTTCAAACGGATCAACAGCACAAGTGACGGCTCAAGTAGTTGTGAGTAGTGAAACTGCAGCAGTGAATGCCGGAAGTTCCGAACAGAACGGATCTGCAGGATCAAATCAGACTGCCGGAACTACAACCATTGTGGGATCTCCACATTACATCACAGTCACAGTTACTGACTCAGACGCAGTGGGGTCAGACGCAGTGGCTGCACAGGGGGTGCACCCCACTTATGTGCAGTATGTAGAGGGCTCAGCAGACCAGGCCATCTATGCCTCCTCCAATGGACAGATATCGTACCCAGTGTACACAGTGGGGGAAACTGGGACTATGTACACCGCAGCATCTGGCCAATACTACTCTGGTAACACCACTGCAGTTACGTATAGTCAGGTGGCAAGTAACTTGACACAAGGAGCCACTGCAGGCCAGCTGCTTGCTCAGGGGAATGGTGCCTACCTCATTCAACAAGGAGTTGATCCAGATACTGCCCATACCCTCATTGCAGCACAAAGAGCTAGCCCACAGACAGTAACAGCTGATGCTGGCGGGGTGGCGTATGTGGTCCCAGGGAATACAGCTACTAACCCTTCTTCTCTGGATGGTGATGGGCATCCTAACCTCTCACACACCACCCGCATTTCGCCGGCCACCGTTCAATGGTTGATGCAAAACTATGAAGTAGCTGAGGGTGTGAGCCTTCCTCGTTCTACACTGTACAACCATTACCTCCGTCATTGCAACGAAAACAAATTAGATCCTGTTAATGCAGCATCATTTGGGAAGCTCATCCGTTCTGTTTTTCTTGGCCTGAGAACCAGAAGACTTGGTACAAGGGGTAATTCCAAATATCATTATTATGGCATCCGTGTAATTCCTGGATCAGCATTAAATCAGCTGTCAGAAGATGGGAGCTCAGCCGTTCGCCAACAGTCATCATCACAGAAACGCTACAAATTCCTATCTGGCTCAGGTGGAAGTGGGAATGGTGCTCAGAAAATAGAAAACCAGTATGAGCAAAATACCAACCATTCAGCCAACTCTAATCATTCCAATTCATCACCACAGCATCCTCATCACCACCAGTACCTAGGTGATGGATCAGGGGCAATACCTGACTTTCCAGATATAGACTTTCCTCCAGGACTTGCCTTACCTGAGGACTGCACATTGGAAGATGTGGACACATTTCGTAGTATCTACAGAGAACATTGTGAGGCATTCCTGGATGCGGTTGTGAACCTGGAATTCCAGACTGTTGAGAGCTTGTGGAGAGAATTCTGGCGAAGCCAGGACAACAACAACGGTGATGAATGTGAAGAGGAGAAGTACTTGTCCAAAACAAAGCTGTATCTTTTATGCAAGTGTGGGCCAGTTCAACAGTTTGTCCGGCGTGTGGATTACCTGTTTTATCAGAATCTAGTCGAAGTCCTCATTCCAGATGTTCTTAGGCCAATTCCAAGTTCATTAACACAAGCAATTCGCAACTTTGCAAAGGGACTGGAATCGTGGTTAACAGGTGCCATGACAGACTGTCCTGAGGAAATGATGCACATCAAAGTGTCAGCTGTGGGCGCCTTGGCACAGACTTTACGACGCTACACCTCATTAAACCATCTGGCTCAAGCTGCACGCGCTGTCCTTCAGAACTCCTCACAGATAGACCAGATGCTGGTTGACCTCAATCGAGTTGACTTCCGCAATGTGCAGGAACAGGCATCATGGGTGTGTCAGTGTGATGATAGCATTGTACAACAACTGGAAGCAGATTTCAAAAAGACACTACATCAGCAGAATTCTTTGGAGCAGTGGGCAGCCTGGCTGAAGGGTGTCGTTACCCAAGTACTGAAGCCATATGAAGGGAAACCCAACTTTGCCAAGGCTGCTAGACAGTTCTTACTCAAATGGTCATTTTACAGCTCAATGGTCATAAGGGACCTAACCCTCCGAAGTGCAGCAAGCTTTGGCTCCTTTCACCTGATCCGTCTACTATATGACGAGTACATGTTCTTCCTGATTGAGCACCAAGTTGCTCTGGAGACAGGGGAGACACCTATTGCAGTCATGGGAGAGAAATACAATAACAATCCGTCCAGTGTGAGTGACTTTATCCAACCAGGCTCCTGTAATGGGGGTGTGTCTCTTACAATGGGAGTTCCTGTCTCTGTAGGAGGGAAGATGGCTCCCACAACCCTAGTTGTTGGAACGAATGAAGTTAGCCACCATCCAGTGGCCACAAAGCGCTTCAAGATCAGCTAA
Protein Sequence
MFFIYNGDVIVYNSILGAKKVTIALARKGRVRTRGTDSGGLVAMATAQPTFSMATAASTAAATTAATASPSDLVGGVVGGGGSSGGGGNQQGQQGASPVATVTVVTSPPSQQQTSQQAIVSANSVSITAVTHHTLQQNGSVDGSLDSPGDSSNGGGASNGSTAQVTAQVVVSSETAAVNAGSSEQNGSAGSNQTAGTTTIVGSPHYITVTVTDSDAVGSDAVAAQGVHPTYVQYVEGSADQAIYASSNGQISYPVYTVGETGTMYTAASGQYYSGNTTAVTYSQVASNLTQGATAGQLLAQGNGAYLIQQGVDPDTAHTLIAAQRASPQTVTADAGGVAYVVPGNTATNPSSLDGDGHPNLSHTTRISPATVQWLMQNYEVAEGVSLPRSTLYNHYLRHCNENKLDPVNAASFGKLIRSVFLGLRTRRLGTRGNSKYHYYGIRVIPGSALNQLSEDGSSAVRQQSSSQKRYKFLSGSGGSGNGAQKIENQYEQNTNHSANSNHSNSSPQHPHHHQYLGDGSGAIPDFPDIDFPPGLALPEDCTLEDVDTFRSIYREHCEAFLDAVVNLEFQTVESLWREFWRSQDNNNGDECEEEKYLSKTKLYLLCKCGPVQQFVRRVDYLFYQNLVEVLIPDVLRPIPSSLTQAIRNFAKGLESWLTGAMTDCPEEMMHIKVSAVGALAQTLRRYTSLNHLAQAARAVLQNSSQIDQMLVDLNRVDFRNVQEQASWVCQCDDSIVQQLEADFKKTLHQQNSLEQWAAWLKGVVTQVLKPYEGKPNFAKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFFLIEHQVALETGETPIAVMGEKYNNNPSSVSDFIQPGSCNGGVSLTMGVPVSVGGKMAPTTLVVGTNEVSHHPVATKRFKIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00209541;
90% Identity
-
80% Identity
-