Cacu023938.1
Basic Information
- Insect
- Cryptophagus acutangulus
- Gene Symbol
- -
- Assembly
- GCA_963556235.1
- Location
- OY744569.1:7145239-7146898[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.36 3.6e+03 -1.1 0.0 22 40 3 21 2 23 0.86 2 9 0.0021 21 6.1 0.1 22 52 243 273 237 274 0.89 3 9 0.00043 4.2 8.3 0.2 21 52 270 301 266 303 0.89 4 9 0.0091 90 4.0 0.0 23 44 300 321 297 325 0.91 5 9 0.013 1.3e+02 3.5 0.0 21 48 326 352 322 355 0.87 6 9 1.9 1.8e+04 -3.4 0.0 37 49 374 386 362 391 0.75 7 9 0.033 3.2e+02 2.2 0.0 21 46 410 435 398 443 0.79 8 9 0.001 10 7.1 0.1 21 52 438 469 431 471 0.86 9 9 0.00081 8 7.4 0.0 21 43 466 488 464 493 0.91
Sequence Information
- Coding Sequence
- ATGGGAGATCAACATGCAATAACAAACATTTGTCGAGCATGTTTAAGTGAATCTGGTAATTTTCAATCGATATTCGTTTCGGACGAACCACAAACAGGCCTTAAACTACATCTATCCGAAATGATTGGTGCCTTCTCCTCAGTGCagGTTACTCTGGGCGACGGGTTACCCGAAGAAATATGTCTAAACTGCGCAAAGAAAACAGTGGAACTCTATTTATTTAAGGTGCAATGCGAGCAAAGCGATCTGGTATTACGAAGGCGATTATTGCTGCAAACAAAACTGCCAGTCGAGATTTTGATTAAACCGGAATTGGTGGCTGAAGATTTTCAACCAGCTTTAGTGGACAATAGTATAGggaatgattttaatttgtttgatgcCGATTTGGTTAagagtagtagtagtagtgaGAGTGAGAGCGATGTGGAGCAGGTTGACAGTGTCCCTAGGACAATTAGTAAGGATTTCGAGTGCGAGATTTGTCAGAAGAAGTTTAGTCGGGAAGATTTGCTGTTGAGACATAAAATTGCACATGCTATGAAGATCCAGATTGAGGAGGCTGATGATGAAGAGGATGGTGATGATGAAACGGAAACGTACAAGGTTCAGCGACAGAACGCGATTGTTATTAAGTCTGAAGATTTGCTCTATTCTTGCTCGAGGTGCGAGCTACTTTTTATAGCGAAGGAACAATTGGCTTTTCATATGGCGAAGCATGAGAAGGAAGATAAATATGTTTGTGAAATTTGCCGAAAAACCTTCAAAAAACGGGGCCATCTAACGCGCCATTTGAAAACCCACTCTTCAGCCAAACCACACACCTGCAAAATCTGCAACAAATCGTTTGCTCGCTCAGAGCAACTCACAAACCATTCGAACCTCCACTCGGGCGTCAAGCCTCACACTTGCTCCACTTGTCTCAAAGGCTTCAACCAAATCTCCAATTTGAAAGACCACATGCGGACGCACAACGGTGAACGCCCTTTCCTCTGCTCTACTTGCGGCAAAGGCTTCAATCAGCTCGGCAATCTGCGCCAACACACTATTCGTCATAGTGGAATTAAAGCGCACTTATGCAGCACGTGTGGCAGTGGCTTTGCGAGCAAAGGCGAGCTTTCGGCACATTTGCGGAAGCATACTGGCGCCCGGCCGTTTGTTTGCATGACCTGCAATCACGGATTTACAACGTCGAGTAGCTTGACGAAACATAAACGGATCCATTCGGGCGAGAAGCCCTACGAGTGCGATGTTTGTAAGATGAAGTTTTCGCGATCCGGAATTTTGGCGAGGCATAAACGAACGCATACGGGGGAAAAGCCGTATGTGTGTCAGTATTGTACGAAGGCGTTTACGCAGAGCAATGATTTGACTAGTCATTTAAGGATACATACTGGGGAGAAGCCGTATATATGCGATGTTTGTGGGCAAGCGTTTCGGCAAAGTTCGGCGCTTAAGACGCATAAAAAGACACACGAACGGGGCCAGGATGATGGCAAGGTTGCGTTGGATTGGAAGTATGAAAATAAGGAGTTCTGTTAG
- Protein Sequence
- MGDQHAITNICRACLSESGNFQSIFVSDEPQTGLKLHLSEMIGAFSSVQVTLGDGLPEEICLNCAKKTVELYLFKVQCEQSDLVLRRRLLLQTKLPVEILIKPELVAEDFQPALVDNSIGNDFNLFDADLVKSSSSSESESDVEQVDSVPRTISKDFECEICQKKFSREDLLLRHKIAHAMKIQIEEADDEEDGDDETETYKVQRQNAIVIKSEDLLYSCSRCELLFIAKEQLAFHMAKHEKEDKYVCEICRKTFKKRGHLTRHLKTHSSAKPHTCKICNKSFARSEQLTNHSNLHSGVKPHTCSTCLKGFNQISNLKDHMRTHNGERPFLCSTCGKGFNQLGNLRQHTIRHSGIKAHLCSTCGSGFASKGELSAHLRKHTGARPFVCMTCNHGFTTSSSLTKHKRIHSGEKPYECDVCKMKFSRSGILARHKRTHTGEKPYVCQYCTKAFTQSNDLTSHLRIHTGEKPYICDVCGQAFRQSSALKTHKKTHERGQDDGKVALDWKYENKEFC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00395723;
- 90% Identity
- iTF_00395723;
- 80% Identity
- iTF_00395723;