Cacu023594.2
Basic Information
- Insect
- Cryptophagus acutangulus
- Gene Symbol
- -
- Assembly
- GCA_963556235.1
- Location
- OY744569.1:5437796-5439213[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.039 3.8e+02 2.0 0.1 26 47 204 225 195 230 0.80 2 7 0.00048 4.7 8.1 0.2 19 45 225 251 218 259 0.79 3 7 3.8e-05 0.38 11.6 0.2 19 46 265 292 255 300 0.79 4 7 0.14 1.4e+03 0.2 0.1 18 34 292 308 291 320 0.73 5 7 0.014 1.3e+02 3.5 0.0 21 45 323 347 315 355 0.87 6 7 0.0058 57 4.6 0.0 20 47 378 405 372 410 0.81 7 7 0.00081 8 7.4 0.0 21 45 407 431 404 437 0.89
Sequence Information
- Coding Sequence
- atgaacAATCAAATACAAATAAGCAGTATTTGCCGTGCTTGCATGGCAAGCGACGTCCACTTAAACTCATTGTTCAATATAATTAGAATTTCCGGTAAAGAAGAGCCCGTAAACTCAGTTTTGCTAAAGTGTACTTCTATCGAGGTGCTGAAAAGCGACCCGTTCTCCCATTACATATGCAACTCATGTCTAGCCAGCCTAACAAACGCATATATATTCCGCGAACTTTGTCGAGATAGTAATGAAAAGTTCAACGAAATTTTCGACCCGAATACGAACATTTCCACGTTTTTAAAGCTGCAAGTGCATAACGACGAAGAATATGAAGCGGCAGAAACCACCGAAATCGAAAAAGCTAATTGTGATAAAGCGCCCGTGGAGGACGAAAAGTTGAACGAAATTTTTGAATCCAACACTAATTTGTCCAGCTATTTGAAGCTGGAAAAGGAGGAGGACGCAGAAAGCTGTGATAGCGAACAGGAAGACGACGATAAAGACAGCGATTTTGTTTCCGAAACTAAATTTCCCTGCAAATTATGCGACAAATCGTTTACGTCCAAATATGCGTTCCACCGGCATCTTAAAACGCATTCCGACTCCGCTGAGCTTAAATGCAGCATTTGCTTTAAGCAATTCACTAGGGCGTTTGATGTGAAAAGGCATATGTCACAACATACAGGCAGTAAACCCTACAGTTGTATGATCTGCAACGCCTCGTTCACGCAATCGGGCACGCTGGCTTATCATATGCGACACCACGAGGATTATAAGCCGCCCGCTAAACAGAAAGCAAATCGCGAGGAAAAGCCGCACTTGTGCTCGATTTGCGGCAAGTCGTTTAAGCAGTCTTCCAATTTGACGATTCATATTCGCAGGCATAAGGGCGACAAGCCGTATTCTTGCAATATATGCAAACTAAGTTTTGTGTCGAGTGGGCGTTTAACTTCTCACAAACGCACCCACACGGGCGAACGTCCCTTCATCTGCGGCGTTTGCGGGAAAAGCTTCGCCCAATCGTCAGTGGTAGCCAAACATTTGAAATCGCACACGGGCGAGCGGCCGTACGACTGCAACTATTGCTCGAAAACCTTCTCAACGCtctactatttaaatattcacaAGCGCAGTCACACAGGCGAGAAACCGCACAAATGTCTGGTTTGCGGTAAGACTTTCGCGGATCCCAAGAACTTGAAGCAGCATAACAAAATTCACACTGACGAGAAACCGTTCCTTTGCAAGATTTGCGGCAAGCAGTTCAGAAGGAGTCATCATTTGAAGGGACATTTGGCGACACATGCGAAAACGGGATAG
- Protein Sequence
- MNNQIQISSICRACMASDVHLNSLFNIIRISGKEEPVNSVLLKCTSIEVLKSDPFSHYICNSCLASLTNAYIFRELCRDSNEKFNEIFDPNTNISTFLKLQVHNDEEYEAAETTEIEKANCDKAPVEDEKLNEIFESNTNLSSYLKLEKEEDAESCDSEQEDDDKDSDFVSETKFPCKLCDKSFTSKYAFHRHLKTHSDSAELKCSICFKQFTRAFDVKRHMSQHTGSKPYSCMICNASFTQSGTLAYHMRHHEDYKPPAKQKANREEKPHLCSICGKSFKQSSNLTIHIRRHKGDKPYSCNICKLSFVSSGRLTSHKRTHTGERPFICGVCGKSFAQSSVVAKHLKSHTGERPYDCNYCSKTFSTLYYLNIHKRSHTGEKPHKCLVCGKTFADPKNLKQHNKIHTDEKPFLCKICGKQFRRSHHLKGHLATHAKTG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00395728;
- 90% Identity
- iTF_00395728;
- 80% Identity
- iTF_00395728;