Cmon028233.1
Basic Information
- Insect
- Cryptolaemus montrouzieri
- Gene Symbol
- -
- Assembly
- GCA_013387265.2
- Location
- JABFTP020000103.1:84765333-84770162[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.013 8e+02 2.0 0.0 26 40 127 142 116 148 0.74 2 4 0.00051 31 6.5 0.1 22 46 182 206 175 209 0.87 3 4 4e-06 0.24 13.2 0.0 21 52 209 240 205 240 0.89 4 4 0.00032 19 7.2 0.0 21 48 237 264 235 270 0.89
Sequence Information
- Coding Sequence
- ATGGATTGTAATTCTGAAGACAGTTATGAAGACACTCCCTTAGCCTTAGAGCCTGTTATTTTGATAGACGATGGAGAAGAGGAACTAGAGAAGATTTCGAATAATATAGTACTGCAGAAAAACAATTTAGAATTGATAAAATCTATTGGTCCCGACATTTCCATCATACCAATCAAGAAGAAGAAACCTCTATTCAAAATCAGATTATTCGATAGAAAAAATGTTCCATGCGAAAGGAAGAGTTCATTTTCTGACGAGGAGGCATCGAATCATCAGAACTATTCACCACGTTCAAGAGGCAACGTTAGGTTAATATCAAAAGAAGAGGCGGAATTAGCACCTGAAACATATCAAAAGCGGAAATCTCTCCCCTTAGAAAAATGTCCCATTTGCAAGAAATTTTTCCGAAGAATGTCTACACATCTGCTGAAGCATGAGTACGTGAGTTCCAGTTACCCAACGAATGGTTTAACTTGCCATTATTGTAATAAGTCGTTTAATACGCACAGTAACTTATTAATCCATATTCGAACTCATACCGGTCAGAAGCCGTACATTTGTGAGGTTTGCGATAAAGCGTTTTCGCAATCTTGCAATTTAGTTAATCACATGCGTATACACAGTGGGGAGAAACCCTTCAAGTGTCCCCATTGCGATAAAGCCTTCACACAATCTGGGAATTTGAATAATCATATAAGGCTCCACACGAATGAAAAACCATTTCGGTGTCATTTTTGTGACAAAGCTTTTGTACAATCTGGAAATTTAAATTCgcatataaaaaataatcataGGTATGCCGACGGAATGTTTTCAGACGATATAAAGCCCATTATACCTGATACAATGATGTCTGAATTAGTGAATTAG
- Protein Sequence
- MDCNSEDSYEDTPLALEPVILIDDGEEELEKISNNIVLQKNNLELIKSIGPDISIIPIKKKKPLFKIRLFDRKNVPCERKSSFSDEEASNHQNYSPRSRGNVRLISKEEAELAPETYQKRKSLPLEKCPICKKFFRRMSTHLLKHEYVSSSYPTNGLTCHYCNKSFNTHSNLLIHIRTHTGQKPYICEVCDKAFSQSCNLVNHMRIHSGEKPFKCPHCDKAFTQSGNLNNHIRLHTNEKPFRCHFCDKAFVQSGNLNSHIKNNHRYADGMFSDDIKPIIPDTMMSELVN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00394782;
- 90% Identity
- iTF_00394782;
- 80% Identity
- iTF_00394782;