Cmon019487.1
Basic Information
- Insect
- Cryptolaemus montrouzieri
- Gene Symbol
- -
- Assembly
- GCA_013387265.2
- Location
- JABFTP020000062.1:67112743-67123798[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0075 2 10.7 1.0 1 23 145 168 145 168 0.97 2 22 0.16 44 6.5 1.6 1 23 174 197 174 197 0.93 3 22 0.0023 0.61 12.3 0.9 2 23 210 231 210 231 0.98 4 22 0.011 3 10.2 0.6 1 23 274 296 274 296 0.96 5 22 2.1 5.7e+02 3.0 1.6 1 23 302 325 302 325 0.75 6 22 0.023 6.2 9.1 1.7 1 23 336 358 336 358 0.97 7 22 0.019 5.2 9.4 1.6 1 23 401 423 401 423 0.97 8 22 0.75 2e+02 4.4 3.3 1 23 429 452 429 452 0.97 9 22 0.00018 0.05 15.7 0.4 1 23 465 487 465 487 0.98 10 22 6.3 1.7e+03 1.5 0.8 1 11 493 503 493 515 0.67 11 22 5.1e-05 0.014 17.5 0.2 1 23 533 556 533 556 0.97 12 22 0.00073 0.2 13.9 3.9 1 23 562 585 562 585 0.98 13 22 0.032 8.7 8.7 1.1 1 23 595 618 595 618 0.96 14 22 0.046 13 8.2 2.3 2 23 664 685 663 685 0.97 15 22 0.34 92 5.5 1.7 1 23 706 729 706 729 0.95 16 22 0.0028 0.76 12.0 6.4 1 23 735 758 735 758 0.97 17 22 0.0084 2.3 10.5 2.2 1 23 769 792 769 792 0.97 18 22 0.0032 0.88 11.8 2.0 1 23 806 828 806 828 0.98 19 22 0.097 27 7.2 1.4 1 23 834 856 834 856 0.97 20 22 1 2.8e+02 4.0 2.1 2 23 864 886 863 886 0.94 21 22 0.4 1.1e+02 5.2 0.5 1 21 892 914 892 918 0.91 22 22 0.00084 0.23 13.7 0.2 1 22 945 966 945 966 0.95
Sequence Information
- Coding Sequence
- atggaaactgGAAACTGCTGGGAAAATGATGATGGCACCATATCTATAGTTAAAACTGAACCGGAAGATGTTCTTTCAATagaatatgatgaaaatggGACTAATGAaCAATCTGAATTTACTCACTACGGTAATGATGAAAATCATGCTGAAGGCCCTCAACAATATGGGGAATCATTGCAAGAAGGATTTCAATTCAAACAAGAAGGAATGGACACAGGGGAAGATATGGAATACAGAATGGAAAGTTATCAGGATGAAGAATATTATCCCTCGGAAGATGCTGATACAGCTGCTCCATCTCATTTGGggtatttggaaaattttcattatagaaAAGGATGTAACCTCCCAGAAACAGATCAAGGTGACTTTAATCAACCTGGAACATCAGACATGAGTACTTTCGCAGATGCACGCGAAGAACAACTTTATCCATGTCGCTACTGCGAATATGTTGGAAACCATCCAAGATTGTTGAGTTCCCACATGAACAATCGCCATACTAAATCGGTAGTGTATCAATGTCCCCATTGCCCATACAATTCTACTATTTCTAAAAGTACTAGAGACCATGTCGACACTAAACATTGCAATGAAGATGATAAACCAATCGATATAAAACGAAAATGTCAATTTTGTGATTACTCGGCTAGTAATGCTActgtgttgaaaaatcacatgAATAAACACACTGGAGAAAAACAACATCAATGTTCTTTTtgcgatttccatactctttGGGAGGGATATTTAAAAATGCATATTAGACGAAAACATGGCGACCAAACTATGGACACTGGAAACCCTGCAAAGGAATATCCTTGTCAATATTGTGATTATAAAGCTTTAACCCCAAGTTCTCTTAAACTTCACACAAATAAACATACCAGAGAACAAGAACATCAATGTCCATATTGTCCATATAAAACAGTTTGGACAACTTATATAAAATTACATATAAAGAATaaacatttgaaagaaaaatctcCAGCTTCCAAAGAATTCGCTTGTAATTTTTGTGACTATAAAGCTAAAAATACGACTTTATTAAAACAACATGAGAATAAACATACACGAGAAAAAGTAAATCAATGCCCCCATTGTCCATTTACTACCTTATGGATTACATACATGAAGCTTCATATTAAACGAAAACATGCAGTAAAAATCGAAGGTGAGAATCCGGAGAAAAGAGAATTTCCGTGCAAATATTGCTCATACAAAGCTATCAGTGGAAGtcatttgaaaattcatgaaaataaacacACCAAAGCAGTGGAATATAAATGTCAACAGTGCGATTTCAAAACAACGTGGTACGGTTATTTGAAACTTCATACTAAGAGAAAACACTCtgtcaaagaagaaaaatctggtTCTAAAACGTCTTACCCTTGCAATTATTGTCCATATAAAGCAATAAATCTAAGCACTCTAAAAGTTCATCAGAACAAACACACCAGAGAGGTTCTGTACAATTGCCCTCATTGCGAATTTAAGACAACTTGGGGCGCTTATATCAAGATGCATATTGAGAAACATAAcgtccaaaatttcaaaactagaaAGCAAGATTTAAAAGGAGTCAAATCTTTTCCTTGTGAATATTGCGATTATGTAGCTACACAAAATGGGTCATTGAAGCAGCATATAAATTCGAAACATACAAGAGAGACATTGCATAAATGCCCGAAATGTGATTATCAGTGTGCTGTTTatggaaatttaaaaatgcACATAAGACGCAGGCACGGATTGAAACCAGACCCTGATGGTAAATATAGATGTAAAGAATGTGAATTTATTTCTGATAATTCAAACGATTTCAAacttcatttgaatgaaaaacatgaCATCAAGCTCGATGTCGATGAAATTAAATTGGAAGATGATAAAGTGTATTCTTGCCATTTCTGTTCTTACCAAACACTATACCCGCAAGTAATGAAGAAACATGTTAATAAACATACCAGACAGAATGTAATTCAGTGTCCACATTGTCCATACAAAACTGTTTGGAATCATTATATGAAAGTTCATATTCGTCGGCACAATGAACCTAAATTAGGAAGGCAGAGGTTCACGAAACCTAACACTGATTTAAATAGATTGTTCCCATGCCAGTTTTGTGACCACAGAAGTTTATCGTTCAGCAGCTTAAAAGATCACATAAATTCTGTTCATACGCGTGAAGTACTTCATAGCTGCCCATATTGTGACCACAAATGCACATTAAAAGGTAATTTGAGGGGACATATTCGAAGAAAACATCCTGCAGAGTTTGTGGAGAACGAAAAGCGCTATTCTTGTGAGCACTGCGATTTTAAGACATCAATAATTAGAAACTTGAAAGTGCATCTGAAAAGAGAACATAACATCGATGATACTAAAGTAAAAGCAGAAAATGGCGAGTTTCAATGTCAATATTGTGAGTATAAAGCAAGAAGTTACTATGCTCTTaaaattcatacaaataaacatacaaaagaaaattcttatCATTGTCCTCAATGTGAATTCGTAACGAGATGGCCAAATTATCTCAGTAAACACATAAAACAACATAGTTTAAATAAAAGGAAGGTTACGTGTTTGTACTGTGATTACAAAGGCTGCTCAACGTTCAGACTGAGAAAACATGTAGAAAGTCTTCATAAAAAAGATCAGTATTACCCTTGCCCAAAACCGAAATGCGATTTTAAAACAATGCATTATCCGAGTTTGAGGATCCACTTAAAAGGCAGCATACATGCAGATTCcagaagaaaatctaatatgagtgtttcaagaaatttctcTTATAAATATGAACCTAATGAAGGCCGATATTTTGCTTGCGATCATTGTGATTATGCTTCGAAAACTCAAGGAAATCTAGATTTGCATATAAAAACAAACATGATAAGAGAGTTATATTAA
- Protein Sequence
- METGNCWENDDGTISIVKTEPEDVLSIEYDENGTNEQSEFTHYGNDENHAEGPQQYGESLQEGFQFKQEGMDTGEDMEYRMESYQDEEYYPSEDADTAAPSHLGYLENFHYRKGCNLPETDQGDFNQPGTSDMSTFADAREEQLYPCRYCEYVGNHPRLLSSHMNNRHTKSVVYQCPHCPYNSTISKSTRDHVDTKHCNEDDKPIDIKRKCQFCDYSASNATVLKNHMNKHTGEKQHQCSFCDFHTLWEGYLKMHIRRKHGDQTMDTGNPAKEYPCQYCDYKALTPSSLKLHTNKHTREQEHQCPYCPYKTVWTTYIKLHIKNKHLKEKSPASKEFACNFCDYKAKNTTLLKQHENKHTREKVNQCPHCPFTTLWITYMKLHIKRKHAVKIEGENPEKREFPCKYCSYKAISGSHLKIHENKHTKAVEYKCQQCDFKTTWYGYLKLHTKRKHSVKEEKSGSKTSYPCNYCPYKAINLSTLKVHQNKHTREVLYNCPHCEFKTTWGAYIKMHIEKHNVQNFKTRKQDLKGVKSFPCEYCDYVATQNGSLKQHINSKHTRETLHKCPKCDYQCAVYGNLKMHIRRRHGLKPDPDGKYRCKECEFISDNSNDFKLHLNEKHDIKLDVDEIKLEDDKVYSCHFCSYQTLYPQVMKKHVNKHTRQNVIQCPHCPYKTVWNHYMKVHIRRHNEPKLGRQRFTKPNTDLNRLFPCQFCDHRSLSFSSLKDHINSVHTREVLHSCPYCDHKCTLKGNLRGHIRRKHPAEFVENEKRYSCEHCDFKTSIIRNLKVHLKREHNIDDTKVKAENGEFQCQYCEYKARSYYALKIHTNKHTKENSYHCPQCEFVTRWPNYLSKHIKQHSLNKRKVTCLYCDYKGCSTFRLRKHVESLHKKDQYYPCPKPKCDFKTMHYPSLRIHLKGSIHADSRRKSNMSVSRNFSYKYEPNEGRYFACDHCDYASKTQGNLDLHIKTNMIRELY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00394835;
- 90% Identity
- iTF_00394835;
- 80% Identity
- iTF_00394835;