Cpra009829.1
Basic Information
- Insect
- Cryptocheilus praepositus
- Gene Symbol
- -
- Assembly
- GCA_033815515.1
- Location
- JAWWQZ010000215.1:431676-436725[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.021 2.3 9.3 3.1 1 23 478 500 478 500 0.97 2 19 0.076 8.3 7.5 0.6 2 23 537 558 536 558 0.93 3 19 0.00097 0.11 13.5 3.7 1 23 627 649 627 649 0.98 4 19 0.00053 0.058 14.3 0.8 2 23 653 674 652 674 0.96 5 19 1.6e-05 0.0017 19.2 2.1 2 23 729 750 728 750 0.97 6 19 0.049 5.4 8.1 7.0 1 23 755 777 755 777 0.94 7 19 0.00045 0.05 14.5 0.7 1 21 783 803 783 807 0.92 8 19 0.00044 0.048 14.6 3.4 2 23 879 900 878 900 0.95 9 19 0.00021 0.024 15.6 5.0 1 23 950 972 950 972 0.97 10 19 0.00031 0.034 15.1 0.7 1 20 977 996 977 998 0.94 11 19 0.00088 0.097 13.6 0.4 2 23 1009 1030 1009 1030 0.97 12 19 3.1e-05 0.0034 18.2 0.6 2 23 1069 1090 1068 1090 0.97 13 19 4.9e-06 0.00054 20.7 2.0 1 23 1095 1117 1095 1117 0.96 14 19 0.00011 0.013 16.4 2.1 1 23 1123 1145 1123 1145 0.98 15 19 5e-06 0.00055 20.7 0.4 1 23 1161 1183 1161 1183 0.95 16 19 4.1e-07 4.5e-05 24.1 0.6 1 23 1189 1211 1189 1211 0.99 17 19 4.4e-05 0.0049 17.7 0.2 1 23 1217 1239 1217 1239 0.97 18 19 0.00016 0.018 15.9 4.1 1 23 1245 1267 1245 1267 0.96 19 19 0.012 1.3 10.1 0.4 1 20 1273 1292 1273 1294 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGTGGAAATAAATGCGCCTGATCCTCCGCAAAATGAAGAGAGTATTGTGTCCGCGATGGAGATTTGCCGAGTCTGCCTCCTCGGGAACCTAGTGATGCGGGACCTTTTTGTACAGAATGAGGTCGACTCCCTGTCAGCGAAGTTGATGAGCTTCGCCAACGTTAAGATAATACCCGGTGATGGACTACCGGCCAGAGTATGCTGCATATGCGCAGAGAAGCTGGAATCGGCATACGAACTGAAATTGCAAGTAGAGCAAGCAGACAGTGTTTTAAGAGAAAGGTTTGATAGTTTAAATATTAAAGAGGAGCTGTTCTTCAATGAGGTTGAAGTACACTTGGATGCTGAAAGAAATGATGGTATGGGAGAATTACACGTTCAAGACCATTATGAAACCACAGCTGAGAATGTAAACGCTAAGGTCGAAGATGATAAGTCGATGCTTTTAAAGGATCAACTGACTCTTTTGCAAGTTGAAAAGTTTGCTGAGCAAGAACAACTTCACAAAGAGCAACAAGAAATACATGTCCTGGACGAAGATATCACGGCTGGGGCCCATTCAGAGGAACTGATTGATAACAAGGATTCCATGAAAATGCATGGGATAACTGTTACTGACGCCGatagcattcacacagaagaaCATGATTATATTATGCAACAAAGTTGCATGCTGCCAACTGAGGAAGAGCAGCTACAAGAACATTTACAAGAGGAAGACCTACAGGAAGAACATTTGCAAGCAGAACATTTGCAAGAAGAACACATGCAGGAAGAACATATACAAGAGGAACATATGCAAGAAGAGCACTTGCAAGAGGAGCATTTACAAGAGGAACACTTGCAACAGAATCACTTGAAAGAGGAACACATGCAAGAAGAACATTTGCAGGAAGAACACCTACAAGAAGAACACCTGCAAGAAGAACACATTCAAGAGGAACATTTGCAAGAAGAACACTTGCAAGAACATTTACAAGAACACTTGCAAGAAGAGCACTTGCAAGAGGAACATTTACAGGAGGAACACTTGCAGGAGGAACATTTACAAGTGGAGCATTTACAAGAAGAACATTTGCATGAGGAACATTTGCAGGAGGAGCATTTTCAGGAAGAGCATTTTCAAGAGGAGCATTTACAAGAAGAACATTTGCAGGAGGAACATTTGCAAGAGGAGCACTTACAAGAAGAACACTTGCAAGAACAGTTGCAAGAACAATCCCAAGAAGAGAGTCAAGAGCAAGAACCTCTGGAGGAAAAATCTCTAGAAGCTCCGCAAGGAGAAGCCAGAAGAAGCAAACGAAAATCAGCCCGTCGAGCCTTTGCCACCGAACGAGACTCCgatgaagaaaattatttcgaaaacctTAATCTTAGTTCGCGTTTGAAGAAGGTGCAGGCCGACAAGTCAGAAAAAGTATTCTTCATGTGCTACCTCTGCGACAAGCAATTTCTGTCGAAAAGCGTTCTCAAAGAGCACATGCACTCGCACGAGGAAGTTAGAAGAGCCTTGTCATTGAAGAAACACCCCGAAAAATCACCGAAGACCCCCACCAGTGCGGTTCCAACAAAAATGCCGCCGTCTGGTAAACGCGCAAATAAGTGTCCATACTGCGGCAAAGAGTATTTGTACATAATCTCCTTCAGTAAGCATCTGAAGCAGCACGAGAAAGAGCGGGAGGAATCAAAGGAGGAACCCATGCCATTGGAAGTCTCGTTCCACGAAGACGAGCACAGTCTAGACTTCGAGCAATCTCAATATTCAGACGCAGACGGAAGAAGACGCTCCAGGAAGGGAGAAACGACCGAAGACGACGACGCGGAGGAGCAAAGCGGTAGTGAGAGACGAAGAAAGTCGCGTAGCGAAGAATTTACCTGCAATAAGTGTTCCGAAAAGTTCCACACGCGAAGGGCCCTCCGAAAACACGCCGCTACGCATATTAATTTGAAGTGCAGCGTGTGCGATGAAGAGTTTGAGACTTTGGAGAAGCTGAGGAACCATCGTACGAAACATGTCGTCGAGGGTGTGTTGACAGATCAAGACTTAGAGGAGGATGCGAAGATGGTTGACAAGGGTGGTGAAGAGTATGACGAGGGACAGAAAGATgaggatgaagatgacgatgacgaGGATCTTGATGAGGAGGAGAAGGATAAGTGGGCGGAAAAGGACTTAAAGTGCCCGAATTGCCCGATGATGTATTCCCACAAGAAATCGCTGTCTAGACACATGGAGACGCATTCTGGGACCAAGTACAGCTGCAAGGTGTGTTGTCAGCAGTTCACGAGGAAGGATCATCTGCGAAGGCATTCGGAGCAACACGGGCGGGTGAAAACGTATAAGTGCACGCAGTGCAACAAGACTTTCGGCAACGAATTGACGCTGCGGAACCATCTGATCGCGACGAGTCATAAAACCTTCATTCACGGGCAGGAGTACGATCCCAATAAACGTATCAAGAGACACGCTGCCAAGGCGGCGCAGAAGATTATTGACAAGATTAAGACGGAGGATGGTTTGGAGGATTATGACGATGATGACAATAACGATTCTGTCGAACTTGATAGTCGCTATAGTCGAAAACGTGATGGTATGCCaaagaaatataattgtaaaaaggagCTCGAGTGCGCCACTTGCAATAAGAGATGTAGCTCAAAGCAGTCTCTTACCAAACATATGGAGCAGCATGTTAAGGAGGAGAAGGCCGAGAAAGCGGAGAAGCTGGATAAGAATAAGAAACCGGTGGAGAAGAAAGACCAAAGGGACATGGGGGATGACGACGATAATGATGACAACTCTGATTTTGAGAGCGGATTAGATTGGCCTATGGACAATCACGAGTGTACCACGTGTAAAAAGAGATACAGCACGAAGAAGTCGCTTTTGAGACATCAATTGCTTCATGAAGAGCCGAACTTCGAGTGCGATATTTGCAACGTTAAGTTTTATAGGAAGGATAAGCTGAAGGCCCACTACGATAAATGTTCGGAGAAAAATCCCGACCAAGTGAGGAAGTGCAATATATGTGGGGACAGTTTCGAGAATAACGAAATGCTGCGAGAGCACAGAGCGAAGCACGTAACCGAGGGTATTCTCACCGAAGAAGACCTGAGAGACATCGAACCGAGACCAGAAGAGAAGAAACAAGGCGAAAAAGTCGCCCGAAAAAGGCGAACCGACATCGTCGGCTTAGAATGCACAGAATGCAACAAGCAGTACACCTCAAGAAAAGGCTTACTCCGTCACATTCAGGTGCACGAAGGCAAGAAGTACCTCTGCGACATTTGCCCTAAGAAATTCTACCGAAGAGAGCACCTAAAGATCCACATGGCAAAGCACAATATGATCAAACCCTACAAATGCACCCGCTGCACGAAACGCTTCATTAAAGAAGAGCAGCTAACCAACCACCTTGCCAAGCACGACAGGACCTTCAAGAAGAGCAAGGAGACCGACAGCTCGAAGAGATTCCTCTGCGAGATCTGCTCCAAGAGCTTCACGCAATCAACAACCCTAATCGCGCATCTGCGAGCACACAACGGCATAAAACCCTACGTCTGCGAGGTTTGCTCACGACCCTTTACCACGAATGCATACTTAAAGATGCACATGAGGACCCACACTCAAGAAAGACCCTACATCTGCCAGTACTGCTCCCGCGCCTTCGCCAGGGCGGACACCCTCGCGAATCATTTAACGTCCCACACCGGAGAAGCCAAGTACCACTGCAAGTACTGTCCAAAGAACTTCAGACGACTCAAGTCCCTGAAGGAACACGTCTTCATCCACACCGGCCAAAGACCCTACGCCTGCCCAACCTGCGACCGACGGTTCAACAACAACGGCAGTCGATACGCGCACAGTAAAAGATGCAAACAGAACTTCCTCCAGAACCAGACCCGCACTCAAACTCTGACGCAGGTTCAGAGTCAACCGCAGCAGAGGGTGCATCAGACTTTGGCCCAGGCGCAGGTCGTGAAGGCGCAAAACATCAAGACCATCACGATCGCCAGGCAAGAACCTGTGCAGCAAGTTATGCAGCATCAGGAAATCCTGATGCCGCTTATCTTGCCGCTTACAGTGACATTGACGGATGTCGGGGAGGAAGTCATACTTCCGGAAGGCACGAAGATCTTTACGACGTCCTAA
- Protein Sequence
- MDAVEINAPDPPQNEESIVSAMEICRVCLLGNLVMRDLFVQNEVDSLSAKLMSFANVKIIPGDGLPARVCCICAEKLESAYELKLQVEQADSVLRERFDSLNIKEELFFNEVEVHLDAERNDGMGELHVQDHYETTAENVNAKVEDDKSMLLKDQLTLLQVEKFAEQEQLHKEQQEIHVLDEDITAGAHSEELIDNKDSMKMHGITVTDADSIHTEEHDYIMQQSCMLPTEEEQLQEHLQEEDLQEEHLQAEHLQEEHMQEEHIQEEHMQEEHLQEEHLQEEHLQQNHLKEEHMQEEHLQEEHLQEEHLQEEHIQEEHLQEEHLQEHLQEHLQEEHLQEEHLQEEHLQEEHLQVEHLQEEHLHEEHLQEEHFQEEHFQEEHLQEEHLQEEHLQEEHLQEEHLQEQLQEQSQEESQEQEPLEEKSLEAPQGEARRSKRKSARRAFATERDSDEENYFENLNLSSRLKKVQADKSEKVFFMCYLCDKQFLSKSVLKEHMHSHEEVRRALSLKKHPEKSPKTPTSAVPTKMPPSGKRANKCPYCGKEYLYIISFSKHLKQHEKEREESKEEPMPLEVSFHEDEHSLDFEQSQYSDADGRRRSRKGETTEDDDAEEQSGSERRRKSRSEEFTCNKCSEKFHTRRALRKHAATHINLKCSVCDEEFETLEKLRNHRTKHVVEGVLTDQDLEEDAKMVDKGGEEYDEGQKDEDEDDDDEDLDEEEKDKWAEKDLKCPNCPMMYSHKKSLSRHMETHSGTKYSCKVCCQQFTRKDHLRRHSEQHGRVKTYKCTQCNKTFGNELTLRNHLIATSHKTFIHGQEYDPNKRIKRHAAKAAQKIIDKIKTEDGLEDYDDDDNNDSVELDSRYSRKRDGMPKKYNCKKELECATCNKRCSSKQSLTKHMEQHVKEEKAEKAEKLDKNKKPVEKKDQRDMGDDDDNDDNSDFESGLDWPMDNHECTTCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEMLREHRAKHVTEGILTEEDLRDIEPRPEEKKQGEKVARKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHMAKHNMIKPYKCTRCTKRFIKEEQLTNHLAKHDRTFKKSKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNFLQNQTRTQTLTQVQSQPQQRVHQTLAQAQVVKAQNIKTITIARQEPVQQVMQHQEILMPLILPLTVTLTDVGEEVILPEGTKIFTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01255845;
- 90% Identity
- -
- 80% Identity
- -