Cpra000675.1
Basic Information
- Insect
- Cryptocheilus praepositus
- Gene Symbol
- -
- Assembly
- GCA_033815515.1
- Location
- JAWWQZ010000004.1:505658-509318[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00024 0.027 15.4 1.4 1 23 32 54 32 54 0.98 2 18 2.7e-05 0.0029 18.4 4.6 1 23 60 82 60 82 0.97 3 18 6.5e-07 7.2e-05 23.5 0.3 1 23 88 110 88 110 0.99 4 18 0.0022 0.24 12.4 0.8 3 23 118 139 116 139 0.91 5 18 0.00023 0.025 15.5 0.6 1 23 144 166 144 166 0.96 6 18 0.00014 0.016 16.1 2.1 1 23 176 198 176 198 0.97 7 18 4e-06 0.00044 21.0 0.8 1 23 204 226 204 226 0.98 8 18 1.6e-06 0.00017 22.3 0.1 1 23 234 256 234 256 0.97 9 18 0.00011 0.013 16.4 1.2 1 23 348 370 348 370 0.95 10 18 1.1e-07 1.2e-05 26.0 0.8 1 23 376 398 376 398 0.98 11 18 1.3e-07 1.4e-05 25.7 0.1 1 23 404 426 404 426 0.98 12 18 0.00059 0.065 14.2 1.3 2 23 433 455 432 455 0.96 13 18 1.2e-05 0.0014 19.5 3.6 1 23 460 482 460 482 0.97 14 18 7.4e-06 0.00082 20.2 1.8 1 23 491 513 491 513 0.98 15 18 1.2e-06 0.00013 22.6 0.2 1 23 519 541 519 541 0.98 16 18 3.9e-05 0.0043 17.9 1.3 2 23 548 569 547 569 0.97 17 18 2.6e-06 0.00029 21.6 3.3 1 23 575 597 575 597 0.98 18 18 2.7e-06 0.00029 21.6 0.8 1 23 603 625 603 625 0.98
Sequence Information
- Coding Sequence
- ATGAGTGATGTTCATCAAATTTTTGAGTCTGCAAGGTTGATCATAATCCGGAGTATCGAATGGCTGACGGGGGCAACGGTGGCTTCGCTTGGCTTCAAGTGCGATCAGTGCGAGCGCGTTTGTCCCAGTAGACAAGCGCTTAACAGGCACAAAATCGTTCACATCGACAGGTATCCGCACGAGTGCGCGTTCTGTGGCAAGAAGTTCAAGAGACTCGAGGGCCTGAAGAGACACCACAAGGTGCACACCATGGAGAGGGATTATCAGTGCACCATCTGTGGACGAGCGTTTAAATTGCAGACCCAGTTGGCAGTTCACGTCAGACGCCATGGGACCAACTACAAGCTCTTCTGCGAGTATTGCGGGAAGGGCTTCCACTCGAGGGAAGAAGTTCGAAGCCACGCCAACGCGAGACACGGGGCGAACGAACATGTGTGCAAAGTTTGCTCGAAAGCTTTCAGAGACGCACGACGATTGGAATTGCATCGTGCGGTTCACGAGCCTAACTATCAACCTGACAAACCGCACCAATGTGAGATATGCGGCAAAACCTTTTCTCTCCTGAGATACATGATATCGCACAGAAACAATCACTTGGAAGAGAATCACTTCGAGTGCGATATCTGTAAGAAGAAGTTGACTTCGAAATCGTCGCTGGTGAGTCACATAAGGTTGCATAGCGGGGAGAAAGTGAAACCGTTCGCTTGCGACATATGCGGGAAGACGTTGGCAAGTAAAGGAACGTTAAAGGTGCATCAGAGGATACACACTGGGGAGAGACCGTTCAAATTCGAAAGTGCAGTAGGAACGAGTAGGGCGGTAATCGACGAACAACTAACCGAGGAAACGATACTTGTAGAAGATATGGTTTTCGTAAAGGAGGAGATACACGTGGAGCCGCAAGATCAAAGTATAGTAGAAGACCCCATTACGAAAAATGAGGAAAGTGCAGTAAAGGATGAAAAGGAGGAAAAGACGAAAGAGAATGAAGACGACAGTGACACTGTGATTCAACGAACTACCAGCGATGCGCGACCGATTTATCAATGTAACGTGTGTTCGAAACGTTTTCGTCTGAAGAACCTCTTCGAAAGACACTTAGTCGCGCACAGCGATGCTCGACCTTTCCAGTGCGACGTCTGTGGTAAATCGTTCAAACGAACGAGTACCCTGGCCGTCCACAAGAGAATACACACCAGAGAGCGAAATTTTGTTTGCGACGTGTGCGGTCGAGCGTTTATTCAAGCATCGCAGCTTGCTACTCATCAGCGAAGACACTTCGAGAGATACACCAAATACTGTGACCTATGCAACAAAGGGTTTTTCACCAACGCCGAGCTACATGGACACATGAACGTCAAACACGGAGCCAAGGAACATGTATGCCAATTGTGCAACAAATCGTTTCCGAACAATCATACTCTAGTGAAGCATCTCAAGATACACGATCCCAATTTCAAGCCTGTCAAGCATCAATGTGAATTCTGCGGTAAGACGTTCGCTTATAAAAACTCTTTGGTCGTTCACGTGAAATCACATACcggtgaaaataaatatgagtgTGATCTGTGCGGAAAGTCTGTTTCGTCGAAGGGATCTCTGCAAGATCATCTCAGGCTGCATGGCGGAGAGAAGTCTTTGGTGTGTGACGTTTGTGGGAAGGCTTTTCATAAGAGGACGACGTTGGTTGTTCACAAGAGGACGCATACAGGGGAGAAACCGTACAGTTGTGATACCTGTGGAAAGTCGTTCACTCAACATTCCACGCTGGTCATACACAAGAGATACCACACGGGTCAGAGACCGTATCAATGTAACTTCTGCAACAAATCGTTCGTGTCCAGGGCACTGCTAAACGCTCATAGTAAAGTGCACACAGTACGTGTAACGTGA
- Protein Sequence
- MSDVHQIFESARLIIIRSIEWLTGATVASLGFKCDQCERVCPSRQALNRHKIVHIDRYPHECAFCGKKFKRLEGLKRHHKVHTMERDYQCTICGRAFKLQTQLAVHVRRHGTNYKLFCEYCGKGFHSREEVRSHANARHGANEHVCKVCSKAFRDARRLELHRAVHEPNYQPDKPHQCEICGKTFSLLRYMISHRNNHLEENHFECDICKKKLTSKSSLVSHIRLHSGEKVKPFACDICGKTLASKGTLKVHQRIHTGERPFKFESAVGTSRAVIDEQLTEETILVEDMVFVKEEIHVEPQDQSIVEDPITKNEESAVKDEKEEKTKENEDDSDTVIQRTTSDARPIYQCNVCSKRFRLKNLFERHLVAHSDARPFQCDVCGKSFKRTSTLAVHKRIHTRERNFVCDVCGRAFIQASQLATHQRRHFERYTKYCDLCNKGFFTNAELHGHMNVKHGAKEHVCQLCNKSFPNNHTLVKHLKIHDPNFKPVKHQCEFCGKTFAYKNSLVVHVKSHTGENKYECDLCGKSVSSKGSLQDHLRLHGGEKSLVCDVCGKAFHKRTTLVVHKRTHTGEKPYSCDTCGKSFTQHSTLVIHKRYHTGQRPYQCNFCNKSFVSRALLNAHSKVHTVRVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01255840;
- 90% Identity
- -
- 80% Identity
- -