Cpri018642.1
Basic Information
- Insect
- Cryptocephalus primarius
- Gene Symbol
- -
- Assembly
- GCA_963576515.1
- Location
- OY754956.1:4784488-4785655[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 4.4 2.6e+03 -1.2 0.0 22 43 107 128 103 134 0.85 2 9 0.066 40 4.6 0.1 22 44 135 157 125 161 0.88 3 9 0.076 46 4.4 0.7 21 51 162 196 157 199 0.74 4 9 1 6.2e+02 0.8 0.1 23 44 192 213 182 221 0.75 5 9 0.25 1.5e+02 2.8 0.2 21 46 218 243 197 251 0.81 6 9 7.6e-05 0.046 14.0 0.0 15 46 267 299 262 307 0.83 7 9 1.5 8.9e+02 0.3 0.0 21 52 302 333 298 335 0.85 8 9 0.17 1e+02 3.3 0.0 21 44 330 353 319 358 0.88 9 9 5.1 3.1e+03 -1.4 0.0 14 22 355 363 354 365 0.81
Sequence Information
- Coding Sequence
- ATGAATATTACGAAACGCACCATCTGCGATTGGTGTTTGCAAAAGGCGCCCGTGCAAAAGATCCAGCAgaagttatggcgcttctggaagATCCTCAGCACAGAAGATTCGACCGCGGCGTCCCTCAGGAGTATCTGCGATAAATGCAGATCCCGTCTCGAGGAGTTCTCGGTACACATCGGGAGGTGTAAGAGCAACGAGTCGACCATAGAGGAGCTGTCTTCTTCGATACCCGGAGATGATGAAATCATCGATATCGAGTATCACCCGTTGATCAAAGGGGAAAGTGATACGTCCGCTCGGTTACCGGGTCCGGGTGATAAGCCCTTCGGATGTTCATCGTGCGACAAAACCTTTGGAACTTCTAGCGTATTGAAGCGACACTCGCTGACCCATACGGGCGATAAGCCGTTCAGATGCTCGTCCTGCGACGTCGCCTTCGTCCAGTCGAGCGACCTGAGGAAACACTCCTCCGTCCATACCGGCGAACGACCGTTCAAATGCCCCTCGTGCGATAAGTCGTTCGCGCGCTCCAACGACTTGAAGAACCACTCGTACGCGCACGTCGGCGTGAGACCCTTCGCCTGTCCGCTCTGTGATAGGAGTTTCGCCACGGCCGGTACGCTGAAGAACCACACGTTCCtccacacgggcgagaagccgtTCGAGTGCCCGTCGTGCGGTAGACGCTTCATGCGCTCGAACGACATGAAGGCGCACGTGCGGATCCACACCGGCGACAGGCCGTTCGCGTGTACGGCGTGCGGCAAGAGCTTCTCCAGGGCGTCCGTGCTCAAGAGCCACTCGCGCGTCCACACCGGCGAGAGGCCGTTCGGGTGTCCGTCGTGCGGCAAGACCTTCGGCGACTCGAGGAACCTGAAGGCGCACCTGCGCGTCCATTCCGGCGAACGGCCCTACCGTTGCTCGTACTGCGACAAGTCCTTCAACAAGTCCAGCACGTGGAAGAGCCACGTGCGGCTCCATACGGGCGAGAAACCGTACAAGTGCGAGCGTTGCGGTACGGGCTTTACCAGGTCGTACGGTCTGAAGAGGCACCTGAGCGACCCGAGGAGCCGTTCGTGTAAGGAGGAGGATGGTTGA
- Protein Sequence
- MNITKRTICDWCLQKAPVQKIQQKLWRFWKILSTEDSTAASLRSICDKCRSRLEEFSVHIGRCKSNESTIEELSSSIPGDDEIIDIEYHPLIKGESDTSARLPGPGDKPFGCSSCDKTFGTSSVLKRHSLTHTGDKPFRCSSCDVAFVQSSDLRKHSSVHTGERPFKCPSCDKSFARSNDLKNHSYAHVGVRPFACPLCDRSFATAGTLKNHTFLHTGEKPFECPSCGRRFMRSNDMKAHVRIHTGDRPFACTACGKSFSRASVLKSHSRVHTGERPFGCPSCGKTFGDSRNLKAHLRVHSGERPYRCSYCDKSFNKSSTWKSHVRLHTGEKPYKCERCGTGFTRSYGLKRHLSDPRSRSCKEEDG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00392968;
- 90% Identity
- iTF_00392968;
- 80% Identity
- iTF_00392968;