Cpri018491.1
Basic Information
- Insect
- Cryptocephalus primarius
- Gene Symbol
- -
- Assembly
- GCA_963576515.1
- Location
- OY754956.1:3828677-3830467[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.15 93 3.4 0.7 17 48 208 239 205 244 0.83 2 11 0.04 24 5.3 0.1 23 48 242 266 238 273 0.82 3 11 0.061 37 4.7 0.1 18 46 265 293 263 299 0.88 4 11 0.33 2e+02 2.4 0.0 14 47 316 350 307 357 0.80 5 11 5.3 3.2e+03 -1.5 0.1 23 45 354 376 351 383 0.77 6 11 0.0041 2.5 8.5 0.2 22 47 381 406 372 411 0.83 7 11 0.0018 1.1 9.6 0.1 21 47 408 434 403 437 0.90 8 11 0.38 2.3e+02 2.2 0.1 20 46 435 461 432 467 0.87 9 11 0.0098 5.9 7.3 0.6 21 46 464 489 456 495 0.81 10 11 0.0025 1.5 9.2 0.0 21 52 492 523 488 524 0.88 11 11 1.5 9.3e+02 0.3 0.1 22 47 521 546 518 549 0.84
Sequence Information
- Coding Sequence
- ATGGACGTGGAGGTAATGACTTGCAATTGGTGCCTGCGAGAAGCACCCGTGCAGATCATCGAGGAGAAACTATGGCGCTTTTGGATAATAATCAGTGCGGAGGATCCCGTCGTGACGTCCCGCAGGAATATTTGCGGGAAATGTAGCCTACGGTTCGAGGCTTTTTTCGCATACATCCAGGAATGCAAGGGCAACGAGGCGACGGTATCGACGGTAGCCGTCCCCGGGAGGGTCGAGGCTCCACCTCCGACCGCCATCGAGTATCATCCCGCAGTCGAAGAAGAGGCGCCGATAGGCCAAGAAGGACGGGTCGAAGGTGAACCGTCGGTCGATGGGGAGCGTCATCCGATGGTGGAGGAAGGAGTACCGTCGAATCGCTCTACCGTGTGGGGTGGAGTCGTCGTGGAGCGCAGGGCGCTGCCGGGCCGTTCGGAACCTCCACGTACGCCGTCGCTCGGTAAGCTCGAAAAGCAATCTTTAGTCGGCATCGAGGATCGTCTCGTAATCGAAGAAGACCGTGCGGGCGTCGATTACCGTACGGCCCGCGACGACGGCAAAGGGAAGGTCGGGTTAGTTTTACGGGTCGTCTTGAAACGCGAAGAGTTATCGGGCCCTGTGATTTCCCGGAGGAAACATAACGCCAATAGGACGTGTCCTCATTGCGATAAAACCTTCCAGTATCCGTACAAGTTACGGATTCACTTACGCGTCCATACGGGTTTCAAGCCTCATAAGTGCCCCGTGTGTAATAAGGCCTTTTCGCAGCCTCAACACTTCAAGACTCACTTGCGCAGGCATGCTGGAGAGAAGCCTTTTATATGTACCGTGTGTAATAAGGCTTTTGCTCACGCCACTAGCTTGAAAAGGCACACGTACCTCCATACCGGTGATACGCCTTTTAAGTGCTCCACCTGCGATAAGACCTTCGCTAGTACCGGTCGTTTGAAGACGCACATGCGGTATCATTCGGAGGcgaagccttttaaatgctccGTCTGTTTCAGGGGTTTCACTTACGTGCATAGCTTGAAGAGTCACATGTACCTCCACACGGGTAagaggccttttaaatgtccgTCCTGCGATGAGGCCTTCACTTGTGCCGCCCATTTAAAAACGCACGTGCGCGTCCATGCGGTCGAGAAGTCTCTCGAATGTTCCACCTGTAAGAAGTCTTTCGCTCAGTCACGTGATTTGAAGAGACACGCGCGCCTTCATACCAGCGGTAGACCTTACGAGTGCCCGTCCTGCGATGAGGTGTTCGTTTACCATCGTAACTTAAAgacgcacatgcgccttcaccAAGGGGAAGAAGCTCTGAAATGCACcgtctgtaataagacttacAGCAGCTCCGTCACCCTGAGGAAGCACTCCCAGATTCATTCGGCCGATAGCCCTTTCAGGTGTGCCCTGTGCAGTAGGAACTATTACGATTCGAATAATTTGAGGAAGCACCTACGGAcccacacgggcgagaagcccTTCAAATGCCCCGTCTGTAATAGTGCCTTCGCGTGGGCCGAGAGcgtgaaaaggcacatgcgccttcacacGGGGGAAAAACCTTTCCAGTGTACCGAATGCCATAAGAAATTTATCGATTCCCGTTGCtggaaaacgcacatgcgccgTCATCACGGGATCGAAAAGCGGTAA
- Protein Sequence
- MDVEVMTCNWCLREAPVQIIEEKLWRFWIIISAEDPVVTSRRNICGKCSLRFEAFFAYIQECKGNEATVSTVAVPGRVEAPPPTAIEYHPAVEEEAPIGQEGRVEGEPSVDGERHPMVEEGVPSNRSTVWGGVVVERRALPGRSEPPRTPSLGKLEKQSLVGIEDRLVIEEDRAGVDYRTARDDGKGKVGLVLRVVLKREELSGPVISRRKHNANRTCPHCDKTFQYPYKLRIHLRVHTGFKPHKCPVCNKAFSQPQHFKTHLRRHAGEKPFICTVCNKAFAHATSLKRHTYLHTGDTPFKCSTCDKTFASTGRLKTHMRYHSEAKPFKCSVCFRGFTYVHSLKSHMYLHTGKRPFKCPSCDEAFTCAAHLKTHVRVHAVEKSLECSTCKKSFAQSRDLKRHARLHTSGRPYECPSCDEVFVYHRNLKTHMRLHQGEEALKCTVCNKTYSSSVTLRKHSQIHSADSPFRCALCSRNYYDSNNLRKHLRTHTGEKPFKCPVCNSAFAWAESVKRHMRLHTGEKPFQCTECHKKFIDSRCWKTHMRRHHGIEKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00392959;
- 90% Identity
- iTF_00392959;
- 80% Identity
- iTF_00392959;