Basic Information

Insect: Cryptocephalus primarius
Gene Symbol: -
Assembly: GCA_963576515.1
Location: OY754956.1:4314065-4315862[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.15 90 3.5 0.7 17 48 209 240 206 245 0.83

2 11 0.12 75 3.8 0.1 23 44 243 264 240 269 0.89

3 11 0.21 1.3e+02 3.0 0.0 21 46 269 294 265 300 0.89

4 11 0.33 2e+02 2.4 0.0 14 47 317 351 308 358 0.80

5 11 5.2 3.2e+03 -1.4 0.0 23 45 355 377 352 384 0.77

6 11 0.006 3.6 8.0 0.1 22 46 382 406 373 410 0.86

7 11 0.0016 0.98 9.8 0.1 21 46 409 434 404 437 0.90

8 11 0.39 2.3e+02 2.2 0.1 20 46 436 462 433 468 0.87

9 11 0.0081 4.9 7.5 0.5 21 46 465 490 455 496 0.80

10 11 0.0024 1.4 9.3 0.0 21 52 493 524 489 526 0.89

11 11 1.5 9.3e+02 0.3 0.1 22 47 522 547 519 550 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.15	90	3.5	0.7	17	48	209	240	206	245	0.83
2	11	0.12	75	3.8	0.1	23	44	243	264	240	269	0.89
3	11	0.21	1.3e+02	3.0	0.0	21	46	269	294	265	300	0.89
4	11	0.33	2e+02	2.4	0.0	14	47	317	351	308	358	0.80
5	11	5.2	3.2e+03	-1.4	0.0	23	45	355	377	352	384	0.77
6	11	0.006	3.6	8.0	0.1	22	46	382	406	373	410	0.86
7	11	0.0016	0.98	9.8	0.1	21	46	409	434	404	437	0.90
8	11	0.39	2.3e+02	2.2	0.1	20	46	436	462	433	468	0.87
9	11	0.0081	4.9	7.5	0.5	21	46	465	490	455	496	0.80
10	11	0.0024	1.4	9.3	0.0	21	52	493	524	489	526	0.89
11	11	1.5	9.3e+02	0.3	0.1	22	47	522	547	519	550	0.84

Sequence Information

Coding Sequence: ATGGAAGTGGCGACGTGCAATTGGTGCCTGCGAGAATCGCCGGTGCGAATCATCGAGGAGAAACTATGGCGCTTTTGGATAATAATCAGTGCAGAGGATCCCGTCGTGACGTCCCGCAGGAATATTTGCGGGAAATGTAGCTTACGGTTCGAGGCTTTTTTCTCATACATCCAGGAATGCAAGGGCAACGAGGCGACGGTATCGAAGGTGGCCGTCCCCGGGAGGGTCGAGGCTCCACCTCCGACCGCCATCGAGTATCATCCCGCAGTCGAAGAAGAGATAGGCCAAGAAGGACGGGTCGAAGGTGAACCGTCAGCCGATGGGGAGCGTCATCCGATGGTTAAGGAAGGAGTACCGTCGAATCACTCTACCGTATCGGGTGGAGTCGTCGTGGAGCGCAGGGCGCTGCCGGGCCGTTCGGAACCTCCACGTACGCCGTCGCTCGGTAAGCTCGAAAAGCAATCTTTAGTCGGCATCGAGGATCGTCTCGTAATCGAAAAAGACCGTGCGGGAGGAGGCGAGTCGGGCGCCGATTACCGTACGGCCTGCGACGACGGCAAAGGGAAGGTCGGGTTAGTTTTACGGGTCGTCTTGAAACGCGAAGAGTTATCGGGCCCTGTGATTTCCCGGAGGAAACATAACGCCAATAGGACGTGTCCTCATTGCGATAAAACCTTCCAGTATCCGTACAAGTTACGGATTCACTTACGCGTCCATACGGGTTTCAAGCCTCATAAGTGCCCCGTGTGTAATAAGGCCTTTTCGCAGCCTCAACACTTCAAGACCCACTTGCGCGGGCATGCGGGGGAGAAGCCTTTTATATGTACCATGTGTAATAAGGCTTTTGCTCACGCCACTAGCTTGAAAAGGCACACGTACCTCCATACTGGTGATACGCCTTTTAAGTGCTCCACCTGCGATAAGACCTTCGCTAGTACCGGTCGTTTGAAGACGCACATGCGGTATCATTCGGAGGcgaagccttttaaatgctccGTCTGTTTCAGGGGTTTCACTTACGTGCATAGCTTGAAGAGTCACATGTACCTCCATACGGGTAagaggccttttaaatgtccgTCCTGCGACGAGGCCTTCACTTGTGCCGCCCATTTAAAAACGCACGTGCGCGTCCATACGGTCGAGAAGTCTCTCGAATGTTCCACCTGTAAGAAGTCTTTCGCTCAGTCACGTGATTTGAAGAGACACGCGCGCCTTCATACCAGCGGTAGACCTTACAAGTGCCCGTCCTGCGATGAGGTGTTCGTTTACCATCGTAACttaaaaacgcacatgcgccttcaccAAGGGGAAGACGCTCTGAAATGCACcgtctgtaataagacttacAGCAGCTCCGTCACCCTGAGGAAGCACTCCCAGATTCATTCGGCCGATAGCCCTTTCAGGTGTGCCCTGTGCAGTAGGAACTATTACGATTCGAATAATTTGAGGAAGCACCTAAGGACccatacgggcgagaagccctTCAAATGCCCCGTCTGTAATAGTGCCTTCGCGTGGGCCGAGAGcgtgaaaaggcacatgcgccttcatacgggGGAAAAACCTTTCCAGTGTACCGAATGCCATAAGAAATTTATCGATTCCCGTTGTTGGAAGACGCACATGCGCCGTCATCACGGGATCGAAAAGCGCTAA
Protein Sequence: MEVATCNWCLRESPVRIIEEKLWRFWIIISAEDPVVTSRRNICGKCSLRFEAFFSYIQECKGNEATVSKVAVPGRVEAPPPTAIEYHPAVEEEIGQEGRVEGEPSADGERHPMVKEGVPSNHSTVSGGVVVERRALPGRSEPPRTPSLGKLEKQSLVGIEDRLVIEKDRAGGGESGADYRTACDDGKGKVGLVLRVVLKREELSGPVISRRKHNANRTCPHCDKTFQYPYKLRIHLRVHTGFKPHKCPVCNKAFSQPQHFKTHLRGHAGEKPFICTMCNKAFAHATSLKRHTYLHTGDTPFKCSTCDKTFASTGRLKTHMRYHSEAKPFKCSVCFRGFTYVHSLKSHMYLHTGKRPFKCPSCDEAFTCAAHLKTHVRVHTVEKSLECSTCKKSFAQSRDLKRHARLHTSGRPYKCPSCDEVFVYHRNLKTHMRLHQGEDALKCTVCNKTYSSSVTLRKHSQIHSADSPFRCALCSRNYYDSNNLRKHLRTHTGEKPFKCPVCNSAFAWAESVKRHMRLHTGEKPFQCTECHKKFIDSRCWKTHMRRHHGIEKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00392959;
90% Identity: iTF_00392959;
80% Identity: iTF_00392962;