Cpri018549.1
Basic Information
- Insect
- Cryptocephalus primarius
- Gene Symbol
- -
- Assembly
- GCA_963576515.1
- Location
- OY754956.1:4325853-4330568[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.6 9.7e+02 0.2 0.1 26 45 114 133 99 140 0.75 2 9 0.32 1.9e+02 2.5 0.1 22 43 138 159 127 166 0.72 3 9 0.00095 0.57 10.5 0.4 25 47 305 327 290 332 0.78 4 9 0.15 88 3.5 0.0 22 45 330 353 327 357 0.88 5 9 0.024 14 6.1 0.0 18 46 354 382 347 391 0.83 6 9 2.4 1.4e+03 -0.3 0.0 24 45 388 409 383 415 0.80 7 9 5.1 3.1e+03 -1.4 0.0 21 44 441 464 431 470 0.75 8 9 0.011 6.4 7.2 0.1 22 52 470 500 456 500 0.83 9 9 0.016 9.7 6.6 0.0 21 46 497 522 495 528 0.90
Sequence Information
- Coding Sequence
- ATGGACGGtactacttgcgattggtgcttacGAGACGCGCCGGCGCAGACGATCCAAGAGAGGTTATGGCGGCTCTGGATGTTaattagcgcagagGATCCGATCTTGGCGTCCCGTAGGAATATCTGCAAGGGATGCGAATCACGTTACGAGGGACTCTCGGTACGTGTCGACATATGGAAGACCCATGCGTCTCTAGTGGAGGGGATGCTGGCTGTGGGACGAATCAAGGACGAGCCTTCGGTCGATATCCTCTGTCATTCGTTGGTTAAGGAAGAGATTTTAACGGAGGACGAGTGCGGCTCGAGCGATTCCACATCGTCTCCTCCGTTACACTTTCAGTGTTCACGCTGCGATAAGGCGTATACTCAGTCGAGTGCCTTGAAGAAGCACATGCGCAGTCATGCAGGTGCAGAGCCGTTTAAATGCCCCGTGTGTAATAAGACCTTTAATCGGCGTAGCGGTTTAAAAACGCACATCGGAGGAGGCCTGAGGTGCTTAAGTACTTTCAATAAGTATTGCTGCGTTATAATGGAGGGTGCTCAAGTGACggcttgcgattggtgcttacAAGAGGCTCCGGTGCAGAGgatccaggagaggttatggcgcttctggaaaataatcagcgcagagGATCCAACGTCGGCATCCCGTAGGAATATCTGCGAGGAATGTAAGTTACGCTATGAGGAATTCTCGGAATATATCGAGACGTGCAAGACCCACGCGGTAGTAGTAGAGAAGATGCTGTCTAAACCCAAGGAAGAGCCTTCTGTCGACGTCTCGTATCATCCGTTGATCAAGGAGGAGGTTTTAACGGAAGACGAGGGCGGCTCGAGCAATCCCACATCGTCTTCCCGGTTACCTTACGATAAGTCGCGCATGCGCCTTCGTGTAGACAAAGAGCGTTTCAAATGTCCCGTCTGCGATAAGACGTGTACTCAGTCGGGCGCTTTGAAGCGACACATGCGCCTTCACACGGGGGAGAGGCCCTTCAAATGTTCCGTCTGTGATAGAAGTTTCGGTGAATCCGGCGGGTTGAAACGGCACATGCGCCGTCATACCGGGGAAAAGCCGTTCGAATGTCCCACGTGTAACAAGGCTTTCGCTTGGTCTACCGTCTTAAAGCAGCACATGCGCGTTCACACGGGGGAAAAGCATTTTATTTGTTacatctgtaataagaccttCGCTTGGTCGAGTACCTTGAAGCAGCACATGCGTCGCCACACGGGGGAAAAGTCCTTTAAGTGCTCCGTCTGCGGTAAAACCTTTAGTGAATCTGCCCGTTCGAAGGGGCACGAGTGTCGTCGAGTGGAAGAAAAGTCCTTTAAATGTTCCACTTGTGGTAAGAGTTTCACCCGTTCCGGCCAcgtgaaaaggcacatgcgcacCCATACGCCCGAGGAGTCCTTCAAGTGCCCCGTCTGCGATAAGAATTTTAGAGAGTGCGATAGCTTGAAGAAGCACATGCGCCtgcatacaggggaaaagccttttaaatgtcccGTATGTGCCGACACTTTTACTTGGTCGAGCGCTTTGAAGCACCACATGTGTCTCCATATGGGGGTGGGACCTTTTAAATGTACCACCTGTATGATCGCCATATTAGTTCCGTCGACTATTGTGCGTAGAACCCACATCCGCAGCCTTCTGCGCATCTATTATTAG
- Protein Sequence
- MDGTTCDWCLRDAPAQTIQERLWRLWMLISAEDPILASRRNICKGCESRYEGLSVRVDIWKTHASLVEGMLAVGRIKDEPSVDILCHSLVKEEILTEDECGSSDSTSSPPLHFQCSRCDKAYTQSSALKKHMRSHAGAEPFKCPVCNKTFNRRSGLKTHIGGGLRCLSTFNKYCCVIMEGAQVTACDWCLQEAPVQRIQERLWRFWKIISAEDPTSASRRNICEECKLRYEEFSEYIETCKTHAVVVEKMLSKPKEEPSVDVSYHPLIKEEVLTEDEGGSSNPTSSSRLPYDKSRMRLRVDKERFKCPVCDKTCTQSGALKRHMRLHTGERPFKCSVCDRSFGESGGLKRHMRRHTGEKPFECPTCNKAFAWSTVLKQHMRVHTGEKHFICYICNKTFAWSSTLKQHMRRHTGEKSFKCSVCGKTFSESARSKGHECRRVEEKSFKCSTCGKSFTRSGHVKRHMRTHTPEESFKCPVCDKNFRECDSLKKHMRLHTGEKPFKCPVCADTFTWSSALKHHMCLHMGVGPFKCTTCMIAILVPSTIVRRTHIRSLLRIYY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00392970;
- 90% Identity
- iTF_00392970;
- 80% Identity
- iTF_00392970;