Cpri018663.1
Basic Information
- Insect
- Cryptocephalus primarius
- Gene Symbol
- -
- Assembly
- GCA_963576515.1
- Location
- OY754956.1:4855488-4856689[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.57 3.4e+02 1.6 0.1 20 43 126 149 112 154 0.78 2 9 6.9e-05 0.041 14.2 0.7 21 52 155 186 126 188 0.91 3 9 0.97 5.8e+02 0.9 0.1 21 43 183 205 180 216 0.85 4 9 1 6.1e+02 0.8 0.2 10 43 199 233 190 238 0.74 5 9 0.0024 1.4 9.3 0.1 11 45 228 263 220 270 0.85 6 9 0.27 1.6e+02 2.7 0.1 18 44 264 290 263 300 0.83 7 9 1.6 9.5e+02 0.2 0.0 19 44 293 318 285 323 0.74 8 9 0.44 2.7e+02 2.0 0.0 18 43 320 345 315 350 0.85 9 9 0.16 98 3.4 0.0 21 43 351 373 345 376 0.89
Sequence Information
- Coding Sequence
- ATGAGTGGTACTGAAGCGACCACCTGCGATTGGTGCTTACGAGGGGCTCCAGTACAGACCATCGGGGAAAAGCTGTGGCGCTTCTGGAAAACAATCAGCGCAGAGGATCCTACGGTGGAATCCCACAGGAAgatctgcgagaaatgtaagGCGCGCTACGAGGACTTCTCGACGTACATCGAGAGGTGTAAGGGCCACGAGTCCGTGATAGCCGGGATATCATCCGGCATGTACGTCAAAGAGGAGCCTTCCCTGGACATCGAGTATCATCCCTTGATCGAAAGAGGAGTCCCCTCGGAGAGAAGTTCAGATGGGGCGGACGAACCGACGGGTCGTCCGAGCGTCCCAGGTAAACCCGAAAGACCCGTAAAATTTAGAGCTAAGGGACCCTTCGAGTGTCCCCGCTGCGACAAGCTGTTCTCTCGGTCCGATTACTTGAAGCAACACGCGCTCGTCCATACGGGCGAGAGACCATTCACGTGTCCCGTCTGCGATAAGACGTTTACGCAGTGCGGCAGCTTGAGGAATCACGCCCGGCtccatacgggcgagaagccctTCGTGTGCTCGCGCTGCGGTAAAGCTTTCGCCGAGCCCTCCACCTTGAGACGGCACTCGCTGAGCCACACGGGCGAGAAACCCTTCAGGTGCGGGCTCTGCGGCAAAACCTTCACCGCCTCCGGCACGTTGAAGAGCCACGAGCGCACCCACACCGGCGAGAGGCCTTTCGGGTGCTCCTTCTGCGGCGCGACCTTCGCCGAATCCAGCACGTGGAGGAAGCACCTACGGAGGCACACGGGCGAGAGGCCGTTCGAGTGTTCCGTGTGTAACAAGACTTTCTCCGCGTCGAGCACCTTGAAGAACCACCGGCGCACccatacgggcgagaagccctTCGGGTGTCAGCTCTGCGGTAAGAGTTTCGCGGCGTCCGGCGTCCTGAAGGGGCACATGCGCCGTCACACGGGCGACAGGCCGTTCGAGTGCTCGTTCTGCGGGAAGACTTTCACCGAATCGACCAATTTGAAGGTTCATCGGCGTGTGCATACCGGCGAGAGGCCGTTCGAGTGCTCGTTgtgtaataagactttcacGCAGTCGGGGGCCTTGAAAAGTCACAAGTGCCATAAAACGTGA
- Protein Sequence
- MSGTEATTCDWCLRGAPVQTIGEKLWRFWKTISAEDPTVESHRKICEKCKARYEDFSTYIERCKGHESVIAGISSGMYVKEEPSLDIEYHPLIERGVPSERSSDGADEPTGRPSVPGKPERPVKFRAKGPFECPRCDKLFSRSDYLKQHALVHTGERPFTCPVCDKTFTQCGSLRNHARLHTGEKPFVCSRCGKAFAEPSTLRRHSLSHTGEKPFRCGLCGKTFTASGTLKSHERTHTGERPFGCSFCGATFAESSTWRKHLRRHTGERPFECSVCNKTFSASSTLKNHRRTHTGEKPFGCQLCGKSFAASGVLKGHMRRHTGDRPFECSFCGKTFTESTNLKVHRRVHTGERPFECSLCNKTFTQSGALKSHKCHKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00392975;
- 90% Identity
- iTF_00392975;
- 80% Identity
- iTF_00392975;