Cpri018600.1
Basic Information
- Insect
- Cryptocephalus primarius
- Gene Symbol
- -
- Assembly
- GCA_963576515.1
- Location
- OY754956.1:4562197-4563516[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.067 40 4.6 0.0 7 52 114 159 110 160 0.74 2 9 0.24 1.5e+02 2.8 0.1 22 52 157 187 153 187 0.87 3 9 0.0038 2.3 8.6 0.0 21 45 184 208 180 211 0.91 4 9 0.0093 5.6 7.4 0.0 21 47 212 238 208 243 0.89 5 9 2.2 1.3e+03 -0.2 0.0 22 48 241 267 239 271 0.82 6 9 0.011 6.7 7.1 0.0 21 45 268 292 254 299 0.86 7 9 0.059 35 4.8 0.0 18 47 293 322 291 328 0.85 8 9 0.11 66 3.9 0.0 11 45 313 348 311 355 0.80 9 9 0.94 5.7e+02 0.9 0.2 18 31 349 362 347 377 0.80
Sequence Information
- Coding Sequence
- ATGAGCGTAGAAGCTACGACCTGCGATTGGTGCCTGCGAGGAGCACCGGATCCGGTCGTGACGTCCCGCAGGAACATTTGCGAGGAGTGCCGATCGCGGTGCGAGGCGTTCTTCGCGTACATCCAGAAATGCAAGAGCAACGAGACGGTGGTGGCGAGGAGCCTCATCCCCGGGAGGGTCAAAGCGGAACCCTCGATGGACATCGAGTATCGATCGTCGATTAAAAAAGACCGTTCGAACGAAGAATCGTCACCTTCAAACCGTCCTATGGTATCGGGTGAAGTTGAGAAAGTCGTACGGCTCGGTAGTGTCGCGTGCTCTTATTGCGATAGGACTTTCAAGCACCCTTCCGCGTTGAAGATCCACACGCGCCTCCATACGGGCGAACGGCCTTTCAAGTGTTCCGTCTGTGATAAGGCTTTCAACGGGTCCGGTCATTTGAAGAGCCACATGCTCGTCCATACACACGAGAAGCCCTTCGAATGTTCCTCCTGTAATAAGACCTTTAATAGACCGTTCCAtttaaaaaggcacatgcgGCTTCACACCgatgaaaagccttttaaatgttcgttTTGCCATCAAGCCTTCGCTCAATCTAGCAACATGGAGAAACACATGCGCGTTCATACCGGCGAGACGCCCTTCAAGTGTCCCGTCTGCGATAAAGCCTTTAGTAGATCCGATCATCTAAAGACGCACGTGCGCCTTCACACAGGCGAAACACCCTTTAAATGCTCATCCTGCCATAAGAGCTTCGCTCAACCCAGCGATATGGTCAAGCACATGCGCATCCACacgggtgaaaagccttttaaatgttcatcctgTAATAAGACCTTCGCTCAGTCTAGCAACATGAAGACGCACATGCGCCGTCACACGGGAGAAAAGCCCTTCAAATGCTCCTTGTGCCATAAGACCTTCACCGACTCCGGTACCGTGAAAAAGCACATGCGTTACCATACGGGAGAGAAGCCTTTCAAATGTGCGGCCTGCGATAGGGATTTTTCCGAATCCGGTGAACTACGGAACCACATGCGCAGGCATACGGGAGAACGACCGTTTAAATGCTCGATTTGTCTTAAGACTTACGCCTGGCGTGGTAGCTTGAAGGTACATGCCCGGATCCATACGAAAAGGGATCGTACTTAA
- Protein Sequence
- MSVEATTCDWCLRGAPDPVVTSRRNICEECRSRCEAFFAYIQKCKSNETVVARSLIPGRVKAEPSMDIEYRSSIKKDRSNEESSPSNRPMVSGEVEKVVRLGSVACSYCDRTFKHPSALKIHTRLHTGERPFKCSVCDKAFNGSGHLKSHMLVHTHEKPFECSSCNKTFNRPFHLKRHMRLHTDEKPFKCSFCHQAFAQSSNMEKHMRVHTGETPFKCPVCDKAFSRSDHLKTHVRLHTGETPFKCSSCHKSFAQPSDMVKHMRIHTGEKPFKCSSCNKTFAQSSNMKTHMRRHTGEKPFKCSLCHKTFTDSGTVKKHMRYHTGEKPFKCAACDRDFSESGELRNHMRRHTGERPFKCSICLKTYAWRGSLKVHARIHTKRDRT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00392951;
- 90% Identity
- iTF_00392951;
- 80% Identity
- iTF_00392951;