Cpri018964.1
Basic Information
- Insect
- Cryptocephalus primarius
- Gene Symbol
- -
- Assembly
- GCA_963576515.1
- Location
- OY754956.1:5905013-5906179[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.54 3.3e+02 1.7 1.7 7 44 65 111 61 115 0.61 2 8 0.015 8.9 6.7 0.1 21 45 116 140 112 147 0.91 3 8 0.58 3.5e+02 1.6 0.0 26 47 149 170 142 177 0.78 4 8 3 1.8e+03 -0.7 0.0 21 45 172 196 164 203 0.83 5 8 0.019 12 6.3 0.0 21 45 200 224 189 230 0.83 6 8 0.00021 0.13 12.6 0.0 26 52 261 287 255 289 0.87 7 8 0.43 2.6e+02 2.0 0.0 21 44 284 307 282 316 0.87 8 8 0.014 8.5 6.8 0.1 26 46 345 365 336 367 0.87
Sequence Information
- Coding Sequence
- ATGAACGATATGCAAGTGCCAACCTGCGATTGGTGCATGCAGAAAGCACCCGCGCAAACAATTATGGAGgagttatggcgcttctggaaatTAATCAGCGCCGAAGATCCCGTGCTATCGTCTCTCAAGAATATTTGTGAGAAGTGTAAATCGAGCCTCGAAGGTTTCTCCATACACGTCCACAAGTGGAGGACCCATGCGTCTACCACGGAAAAGCTACGATCTTCGAGCCGAACGCTTCCACCGGGTTCCTCGAGGAAACCCACAACTACTCTAACATGTTCGTACTGTGGTAAAACCTTCACTAAAGCCTCTCGGTTAAAGACCCATTTGTGCATtcatacgggcgagaagccttACAACTGTCCACACTGCGATAAGACCTTTGCTCAGTCCAGCCATTTAACCGTTCACTTGCGTACTCACACGGgtgacaaaatttttaaatgttcgttGTGCAGTAAAGCGTTCATTCGGTCCAGTGATTTGAAGGGCCACTTGCGTCTTCACACGGGCGAGAGGCCTTACAAGTGTTCACGTTGCGGTAAGGGCTTCGTTCAGTCCGGTCATTTGGAGGCGCACATGCGCAGTCACACAGGAGACAAACCGTATAAGTGTCCGTTGTGCGGTAAAGGTTTCACCGTGTCGTCCAGTGTGAAACGGCACTTGCTCGTCCATTCGAGCGGTAAACTCTTCGAATGTTCGCGGTGCCGTAAGAGTTTCACTCATTCTAGCAGCTTGAATTCTCACATGCGTGTACATACGGGCGACAAGCTTTTCAAGTGTTCAATTTGCGGTAAGAGTTTCACACAGTCTAGGAATCTGAAGGAGCACCTGACCATCCACACGGGGGAGAAGCCCTTCAAATGCTCTCGCTGCGATAAGACTTTCCTTCGCTCCGGTAACCTGAAGAGCCACATGTACAGTCACGCCGGCGACAAACCGTTCAAGTGTTCGTTTTGCGATAAAGCTTTCGCGTGGTTCAGTAATTTCAATAACCACTTGCGTGTCCATGCGGGCGATAAACGTTTCAAATGTTCACAGTGCGACAAGACCTTCGTGCAGTCGGGTAACTTAAAGAGGCATCTGCGCGTTCACATAGGCGATGGATAA
- Protein Sequence
- MNDMQVPTCDWCMQKAPAQTIMEELWRFWKLISAEDPVLSSLKNICEKCKSSLEGFSIHVHKWRTHASTTEKLRSSSRTLPPGSSRKPTTTLTCSYCGKTFTKASRLKTHLCIHTGEKPYNCPHCDKTFAQSSHLTVHLRTHTGDKIFKCSLCSKAFIRSSDLKGHLRLHTGERPYKCSRCGKGFVQSGHLEAHMRSHTGDKPYKCPLCGKGFTVSSSVKRHLLVHSSGKLFECSRCRKSFTHSSSLNSHMRVHTGDKLFKCSICGKSFTQSRNLKEHLTIHTGEKPFKCSRCDKTFLRSGNLKSHMYSHAGDKPFKCSFCDKAFAWFSNFNNHLRVHAGDKRFKCSQCDKTFVQSGNLKRHLRVHIGDG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00392936;
- 90% Identity
- iTF_00392936;
- 80% Identity
- iTF_00392936;