Cpri018983.1
Basic Information
- Insect
- Cryptocephalus primarius
- Gene Symbol
- -
- Assembly
- GCA_963576515.1
- Location
- OY754956.1:5957950-5959242[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.039 23 5.4 0.0 21 52 114 145 97 147 0.84 2 10 4.3 2.6e+03 -1.2 0.0 22 46 143 167 139 172 0.85 3 10 1 6.3e+02 0.8 0.0 27 51 176 200 170 203 0.81 4 10 1.3 7.9e+02 0.5 0.0 22 52 199 229 195 231 0.85 5 10 3.9 2.3e+03 -1.0 0.0 22 45 227 250 224 254 0.85 6 10 0.0032 1.9 8.9 0.1 21 52 254 285 249 287 0.86 7 10 0.031 19 5.7 0.0 21 44 310 333 303 340 0.87 8 10 0.66 4e+02 1.4 0.0 26 46 343 363 337 366 0.88 9 10 0.0042 2.5 8.5 0.2 22 46 367 391 362 393 0.91 10 10 0.00094 0.57 10.5 0.2 22 45 395 418 390 422 0.90
Sequence Information
- Coding Sequence
- ATGGTCAGGATTAGCAGCGTCCCTTACTACTTGCTTACTTATTCCCAGCACACTTTCTTCCAGAATCCCCCCATCGTAACCCTGAAGAACATCTGCGAGAAGTGCAGGTCACGCTACGAGAAATTCTCTGAATATATTGACCGGTGTAAGAGCAACGATTCCATAATGGAAATGACGCTCCTTCCCGGGGAAGTCCAAACGGAACTCTCTAACCATGCAGGAGTAATCCCTGCCGGCGTATCCGCAGACCCTCAGGATAAATCTACGTTCGCTTGTTCGTATTGCGGTAAGGCGTTCACTCACCCGTCGAAGTTGAACATTCACATGCGCACTCACACCGGCGACAAACCGTTCAGTTGCACGCAGTGTGATAAAAGTTTCACTACGTCCTACGACCTGAAGAGGCACCTGCGGGTCCACACGGGCGACAAGCCGTTCGAGTGTTCGTGCTGCGATAAACGTTTTTCCTGCTCGTACGAGTTGAAGACGCATCTGCGCGTCCACGCCGGCGACACGTCGTTCAAGTGTCAGTTTTGCGATAAGTGCTTCTACACTTCTTCGAAGTTGAAGAGGCACATGGGGGTCCATACGGGCGACAAGCCGTTCATGTGCTTGTATTGTAACAAGAGTTTTTCCGATTCGTCGTGTTTGAAAAATCACTTGGCTATTCATACGGGTGACAAGCCGTTCGCTTGTTCGTATTGCAGTAAACGCTTCCACACCTCTTCCGCATTGAACACCCACTTGCGTACCCACACGGCCGACAGGCCGTACAAGTGCTCCTACTGCGACATGTCGTTCTCGACCTCCTCGAACCTGAAGCGGCACCTGCGCATCCACACAGGCGACAAGCCCTTCTCGTGTTCGCTCTGCGATGAGAAGTTCCCCTCCTCCTCCGGCCTGAACATTCACCTGCGGACCCACTCGGGCGAGAAGCCGTTCGGGTGTCCCGAGTGCGACAAGCGCTTCTACACGACCTCGAACCTGAAGAGGCACTCGCGCGTCCACACGGGCGACAAGAACTTTAGGTGCTCGTACTGCGACAACACCTTCACCCAGTCCAGCCACCTGAAGAGTCACCTGCGCATCCACACGGGCGACAGGCCGTTCACGTGCTCGCACTGCGATAAGACTTTCACTCAGTCCTCGACCCTGAGGTCTCACCTGAGGATCCATACGGGCGACAGGCCGTTCACGTGCCCGTGCTGCGATAAGACGTTCGCGCAGTCCGCCACTTTGAAGACCCACCTGCGTACTCACGCCGGCGACGAGCAGGGtcgttgtaataaataa
- Protein Sequence
- MVRISSVPYYLLTYSQHTFFQNPPIVTLKNICEKCRSRYEKFSEYIDRCKSNDSIMEMTLLPGEVQTELSNHAGVIPAGVSADPQDKSTFACSYCGKAFTHPSKLNIHMRTHTGDKPFSCTQCDKSFTTSYDLKRHLRVHTGDKPFECSCCDKRFSCSYELKTHLRVHAGDTSFKCQFCDKCFYTSSKLKRHMGVHTGDKPFMCLYCNKSFSDSSCLKNHLAIHTGDKPFACSYCSKRFHTSSALNTHLRTHTADRPYKCSYCDMSFSTSSNLKRHLRIHTGDKPFSCSLCDEKFPSSSGLNIHLRTHSGEKPFGCPECDKRFYTTSNLKRHSRVHTGDKNFRCSYCDNTFTQSSHLKSHLRIHTGDRPFTCSHCDKTFTQSSTLRSHLRIHTGDRPFTCPCCDKTFAQSATLKTHLRTHAGDEQGRCNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00392927;
- 90% Identity
- iTF_00392927;
- 80% Identity
- iTF_00392927;