Cpri018546.1
Basic Information
- Insect
- Cryptocephalus primarius
- Gene Symbol
- -
- Assembly
- GCA_963576515.1
- Location
- OY754956.1:4319118-4320732[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 7.9 4.7e+03 -2.0 0.6 17 30 104 117 100 121 0.83 2 10 1.8 1.1e+03 0.0 0.1 23 45 133 155 128 159 0.84 3 10 0.022 13 6.2 0.0 24 45 162 183 155 190 0.84 4 10 0.11 66 3.9 0.0 21 47 187 213 182 218 0.81 5 10 0.0058 3.5 8.0 0.5 21 45 215 239 211 246 0.90 6 10 3.3 2e+03 -0.8 0.0 22 46 244 268 241 271 0.83 7 10 0.00049 0.3 11.4 0.0 21 52 271 302 259 303 0.87 8 10 0.12 74 3.8 0.0 21 45 299 323 295 331 0.87 9 10 0.15 93 3.5 0.0 21 46 355 380 347 385 0.87 10 10 0.005 3 8.2 0.0 22 45 384 407 381 411 0.89
Sequence Information
- Coding Sequence
- ATGGGTGTttctacttgcgattggtgctcgCGAGAGGCGCCGGTGAAGACgatccaggagaggttatggcgcttctggaaagtaatcagcgcagagGATCCGACTTCGGCGTCCCGTAGGAATATCTGCGACGGATGTGAATCCCGCTGCGAGGGATTCTCGGCGTCTATCGAGACGTGGAAGACGCACGCGTCCGTAGTGGATGGAATACTGGGGCGAGCCAGGGAGGGAGCTTCGATCGATGCCCGGTACCATCCCGTATGGATCAAGGAGGAGGTTTTGACGGACTACGAGGCCGGCTCGAGTAATTCCACGGCCCTCTCCGAGTCGTCTTGTAAGTGTCCACGCTGTGACGAGGCTTATACTGGGTGTCACGCGTGCCCTCGTCCAGAGAGAAggccttttaagtgttccatctgtaataagagtTACGTTTGCTCCGACGATTTGAAAGACCACATACGAGTCCATGCGGGGGAGGAGCGTTTTAAATGTCCCACGTGTAATAAGAGCTTTAAGCACTCGAGTAATTTAAAGGAGCACATGCGCTCCCACACCGGCGAGAAGCCTTTCCGATGTCCGTCCTGCGATAAGACGTTCGCCTGGTCCAGCGTCCTGAAAAACCATATGCGCGTCCATACGGGGGAAAAGCCTTTCAAGTGTTACATATGTAATAAGGCTTACGCCCGTTCCGAGCCTTTGAGAAGGCACATGTGCGTTCATACCGGCGAGGTGCCCCTTAAATGCTCCGTCTGTGATCTTAGCTTCACCTGGCCTTACGATCTGAAGAAGCACATGCGCCTACATACGGCCGAAGAGCCCATCAAGTGTTCCATCtgcgataagacttttactctgTCCGGTAATTTGAAGAAGCACATGAGCCTTCACATGGGTGAGAAGCCGTTTAAATGCTCCACGTGTAACAAGAGCTTTAATCACTCGAGTAACTTCAAGAAGCACGTGCGCTCtcacacgggcgagaagccttttCAGTGCTCCTCCTGCGATAAGACTTTCGCTTGGTGCAGCCTTTTGAAGAACCACATGCGCATCCATACAGGGGAGAAGCCccttaaatgttccatctgcgATAAGGCTTTCGCCTGGTATAGCAGCCTGAGGatgcacatgcgccttcatacgggTGAAAAGTCTTTCACCtgttctatctgtaataatAGTTTCACCAAGTCTGGTAGTTTGAAGCGGCACATGCGCGTCCACACTGGAGGTCGTCGAAGAGCCCTTGAGACGTTGCCCTCGGGATGA
- Protein Sequence
- MGVSTCDWCSREAPVKTIQERLWRFWKVISAEDPTSASRRNICDGCESRCEGFSASIETWKTHASVVDGILGRAREGASIDARYHPVWIKEEVLTDYEAGSSNSTALSESSCKCPRCDEAYTGCHACPRPERRPFKCSICNKSYVCSDDLKDHIRVHAGEERFKCPTCNKSFKHSSNLKEHMRSHTGEKPFRCPSCDKTFAWSSVLKNHMRVHTGEKPFKCYICNKAYARSEPLRRHMCVHTGEVPLKCSVCDLSFTWPYDLKKHMRLHTAEEPIKCSICDKTFTLSGNLKKHMSLHMGEKPFKCSTCNKSFNHSSNFKKHVRSHTGEKPFQCSSCDKTFAWCSLLKNHMRIHTGEKPLKCSICDKAFAWYSSLRMHMRLHTGEKSFTCSICNNSFTKSGSLKRHMRVHTGGRRRALETLPSG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00392967;
- 90% Identity
- iTF_00392967;
- 80% Identity
- iTF_00392967;