Cpri018455.1
Basic Information
- Insect
- Cryptocephalus primarius
- Gene Symbol
- -
- Assembly
- GCA_963576515.1
- Location
- OY754956.1:3565127-3571751[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0045 2.7 8.4 0.2 23 44 196 217 188 221 0.89 2 8 0.019 11 6.4 0.0 21 45 222 246 219 249 0.90 3 8 0.019 12 6.3 0.1 22 44 251 273 247 281 0.88 4 8 0.004 2.4 8.5 0.3 18 48 303 333 298 339 0.85 5 8 1.9 1.1e+03 -0.0 0.0 21 45 334 358 330 361 0.87 6 8 0.036 21 5.5 0.1 22 52 363 393 351 394 0.85 7 8 0.0013 0.76 10.1 0.1 21 44 418 441 412 449 0.87 8 8 9.4 5.7e+03 -2.3 0.0 22 46 447 471 443 477 0.79
Sequence Information
- Coding Sequence
- ATGGAAAGCCAGGCCTACGAAAAGCGGCACCAGATTACAAATGATCATTTGtCAGAAAACCTCTGCAAAGTGCTGTACGAGTGCCCGTGGTACGATTGGGACAAAAGCAATTGCACCACCTTAATCATCATCATGTCGATGATGAAGAAACCATTGTTGAGGACAGAAATATTTGGCGTGGTAGAAGTAAACAATAAAGCGTTCTTGAAGGTGAACGTGACCGCGTGCGATTGGTGCACGCAGGAAGGACCCGTGCAGACCATCGGGGAGCAGCTGTGGCGCTTCTGGGGTGTGATCAGCGACGAATATCCCCCTAAAACGTCCCTAAGGAACATCTGCGGGACCTGCCGGTCGCGCTGTGAGGAACTCTCCGTACACGCCGAAAGATGGAAGCACGCCGACTCCCTGGCGACGAACGTCCTCGCCTCCGGGAACGTCGAGGAGGAATATTCGATCGACGTCGAGTATCACCCGGTGATTAAGGAGGAAGTTCTGGAGGAGTTAGGCGAAGGAAAAGGGGGCGTTCCGTGTCCGTTTTGCCGTAAACGTTTCGCCACCCCGTACCGCTTGAAGGTACCTAGACACTCGCCGTACAAATGCCCGCATTgcgataaggcttttactcagtcttACCGTTTGAAGAGGCACTTGCTGGTTCATACCGGCGAGAGGCCCTTTAAATGTTCGCGTTGCGACAAGTCGTTTAACCAGTCTGGTAACTTAAAGAACCATTTACTCATTCATGCAGGCGAGACGCCCTTCGAGTGTCCGTATTGCCATGAGGCATTTAACGAGTCTCGTCTCTTGAAGGAGCACTCACGCGTACATACGAGTCAGAAGTCTTTCGAATGCACATTCTGCGGTAAGACTTTCACCTGGTTCAGCCACTTGAAGAGGCACTTGCGACGACACACCGGCGAACGGCCTTTCAAATGCCCGCTCTGTCGTAAGACCTTCGCCGGGTCCGCTCACTTGAGAAGTCACGTGCGGTTCCATACgggtgaaaaaccttttaagtgTTCTCTGTGCGATAAGACCTTCGCTTGGTCCGGCGTCTTGAAGACGCACTTGCGCACTCACACCGGCGATAGGCCCTTTCGGTGTTCGCTGTGCGGTAAGGCCTTCGCTCACTCTCGTACCTTGAAGGGCCACTTGCGCGTCCACAGGGGCGAGAAGCCCTTCGAGTGCTCTCGGTGCGACAAGAGCTTCGCTGACTACGGTAACATGGCTATACACCGTCGCACTCATACGGGCGACAGACCTTTCGAATGTCCGCATTGTTTTAAGGTTTTTGTACATTCTAGTGACTTGAAGAGGCACTCGTACGTTCATTCTGGCGAGAGACCTTTTAAGTGCGTACAGTGCGATAAGGCTTATACCACGTCGACTTCTTTGAAGGAGCACTCGCATATCCACTCCGGCGATAAACCTTTTGAATGTTCGCACTCCGGCTTTGGCCTTTCCATCGCCGGCTACATGACGATCAGGACTTGCCACTTCTCCTTCCACGGCGTCTTCTTCGATTATAAGGTGATCCTCGATCTCGAGTGGAGATTCTTCTTTGATCTTCCGGAGCAAAAGTGGATCTGGAAGATTTGA
- Protein Sequence
- MESQAYEKRHQITNDHLSENLCKVLYECPWYDWDKSNCTTLIIIMSMMKKPLLRTEIFGVVEVNNKAFLKVNVTACDWCTQEGPVQTIGEQLWRFWGVISDEYPPKTSLRNICGTCRSRCEELSVHAERWKHADSLATNVLASGNVEEEYSIDVEYHPVIKEEVLEELGEGKGGVPCPFCRKRFATPYRLKVPRHSPYKCPHCDKAFTQSYRLKRHLLVHTGERPFKCSRCDKSFNQSGNLKNHLLIHAGETPFECPYCHEAFNESRLLKEHSRVHTSQKSFECTFCGKTFTWFSHLKRHLRRHTGERPFKCPLCRKTFAGSAHLRSHVRFHTGEKPFKCSLCDKTFAWSGVLKTHLRTHTGDRPFRCSLCGKAFAHSRTLKGHLRVHRGEKPFECSRCDKSFADYGNMAIHRRTHTGDRPFECPHCFKVFVHSSDLKRHSYVHSGERPFKCVQCDKAYTTSTSLKEHSHIHSGDKPFECSHSGFGLSIAGYMTIRTCHFSFHGVFFDYKVILDLEWRFFFDLPEQKWIWKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00392960;
- 90% Identity
- iTF_00392960;
- 80% Identity
- iTF_00392960;