Cpri018489.1
Basic Information
- Insect
- Cryptocephalus primarius
- Gene Symbol
- -
- Assembly
- GCA_963576515.1
- Location
- OY754956.1:3825777-3826999[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 3.9 2.3e+03 -1.0 0.0 26 47 111 132 106 138 0.77 2 10 0.69 4.1e+02 1.4 0.1 21 45 134 158 113 162 0.77 3 10 0.032 19 5.7 0.0 21 45 162 186 158 190 0.88 4 10 0.085 51 4.3 0.0 26 47 195 216 188 221 0.87 5 10 1.8 1.1e+03 0.1 0.0 27 46 224 243 222 248 0.87 6 10 0.38 2.3e+02 2.2 0.3 26 44 251 269 242 274 0.85 7 10 0.0008 0.48 10.8 0.1 17 46 270 299 266 304 0.89 8 10 0.01 6 7.3 0.0 26 51 307 332 301 334 0.84 9 10 0.0011 0.67 10.3 0.1 21 52 330 361 326 361 0.89 10 10 0.00081 0.49 10.7 0.0 21 52 358 389 356 390 0.89
Sequence Information
- Coding Sequence
- ATGGGCGATTCTACTTGCGACTGGTGCTTAAAGGAGGAGCCGGTGCAGACGATCCGGGAGAGGTTATGGCGCTCCTGGGAAGTgatcagcgcagagGATCCGATCTTGGCGTCCCATAGGAATATCTGCGACGGATGTGAGTCGCACTGCGAGGACTTCTCGGCGCGTATCGAGACGTGGAAGGCCCACGCTTCTACGGTGGATGGAATACTGGGACGGGAACCGTCGATCGGTGCCCAGCACCATCCGGTGATCGAGGGGGGAGTTTTAACGGAGGACGAGGCCGGCTCGAGTAATTCCACATCCGGCGTCGGTCGTACGAGCAAAAACTCATGCCCGACGTGTAAGAAGACTTTTACTCGACCCGTCGCTTTGAAAAATCACATTCGAGTCCACACGGGTGAAAAGCCTTTCAGATGTTCCGTTTGCGGCAAGGCTTTCGCTTGGTCCGAAGTGCTGAAGAGTCACATGCGCTTCCATACGGGCGAGAAACCTTTCGAATGTCCCGTCTGTGATAAGGCTTTCGCTTGGTCCGGCGTTTTCAAACGGCACATGCGCGTTCACACGGGCGAAGAGCTTTTCAAGTGTTCcgtctgtaataagaattttaccgAATCGAGCAGTTTGAAGAGGCACTTGCTGCTTCACACGGGCGGAAAGCTGTTCAAGTGTTCCGTCTGCGGTAAGAACTTCAGCGAATCGGGTAGTTTGAAGAGGCACACGCGTCTTCACACGGGCGAAAAGCTCTTCGAGTGTTCCGTTTGTACCAGGACTTTTACTCGGTCCGGGCAGTTGAAGAGGCACATGTGCCGTCATACCGGCGAGAAGCCTTTCAAATGTCCCACCTGCGATAAGGACTTCAGTGATAATAGCAATTTGAAACGGCACATGTGCCTTCATACGAAAGAAAAGCTTCTTAGGTGCCCCATTTGTAATAAGGATTTCGCCGAGTCCGGCGGCTTGAAGAGGCACATGCGTATTCATACCGGAGAGAAGCCGTACCGATGTTCCATCTGCAGTAAGAGTTTCACCGAGTCCGGTAGCTTGAAACGGCACATGCACCTTCACACAGgagaaaagccatttaaatgtcCCGTCTGTactaagacttttactcagtcagGTGGTTTGAAAGTGCACATGCGGGTTCATAGAAGCGAAAAGCCTTTTTAA
- Protein Sequence
- MGDSTCDWCLKEEPVQTIRERLWRSWEVISAEDPILASHRNICDGCESHCEDFSARIETWKAHASTVDGILGREPSIGAQHHPVIEGGVLTEDEAGSSNSTSGVGRTSKNSCPTCKKTFTRPVALKNHIRVHTGEKPFRCSVCGKAFAWSEVLKSHMRFHTGEKPFECPVCDKAFAWSGVFKRHMRVHTGEELFKCSVCNKNFTESSSLKRHLLLHTGGKLFKCSVCGKNFSESGSLKRHTRLHTGEKLFECSVCTRTFTRSGQLKRHMCRHTGEKPFKCPTCDKDFSDNSNLKRHMCLHTKEKLLRCPICNKDFAESGGLKRHMRIHTGEKPYRCSICSKSFTESGSLKRHMHLHTGEKPFKCPVCTKTFTQSGGLKVHMRVHRSEKPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00392939;
- 90% Identity
- iTF_00392939;
- 80% Identity
- iTF_00392939;