Cpri018482.1
Basic Information
- Insect
- Cryptocephalus primarius
- Gene Symbol
- -
- Assembly
- GCA_963576515.1
- Location
- OY754956.1:3765011-3766293[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.6 9.6e+02 0.2 0.0 23 52 90 119 82 119 0.83 2 11 0.14 85 3.6 0.0 21 43 116 138 108 142 0.91 3 11 1.4e-05 0.0084 16.4 0.1 21 52 144 175 139 175 0.89 4 11 0.003 1.8 8.9 0.0 21 46 172 197 169 203 0.90 5 11 0.11 66 3.9 0.1 26 48 204 226 199 230 0.85 6 11 0.035 21 5.5 0.0 21 45 227 251 223 254 0.91 7 11 0.0001 0.061 13.7 0.0 20 47 254 281 251 286 0.90 8 11 0.0025 1.5 9.2 0.0 21 48 283 310 279 314 0.87 9 11 0.003 1.8 9.0 0.0 21 44 311 334 309 338 0.90 10 11 0.0044 2.6 8.4 0.0 21 46 339 364 334 371 0.89 11 11 0.0032 1.9 8.8 0.0 22 52 368 398 363 399 0.85
Sequence Information
- Coding Sequence
- ATGAACGCAACGATCTGCGATTGGTGCATGAGAGAAGCACCGGTGCAAATCATCGAAGGGAACTTGTGGcgcttttggaaaataatcagcGCAGAGGACCCGCTTGTAATATCCCACAGGAATATTTGCAAGAGGTGTGAATCACGCTACGAGGAATTCTACACGTACATCGAAAAGTGTAAGCTCCACGCATCCGTAATACAGGAGATAGAATGTCGGAGCATCGAAGAAGAATCCTGGAATCCCCCCGGAGTCCATAGCGGTGACGGACCTTTCGAATGTCAATCTTGTCGTAAGGCTTTTACTCGTTCTACCGGTttaaaaacgcacatgcgccttcatacgggcgaaaagccttttaaatgctcaCTTTGCGATAAGGCCTTTAATCAGTACGGCAGTTTGAAACGGCACACGTACACccatacgggcgagaagcctCTTAAATGCCCGTCGTGCGATAGAGCTTTCCGTCAGTCCAGAGATCTGGAAACGCACGTGCGCCTCCACACGGGTGAAAAGCCTTTCAAGTGTTCGCTTTGTAACGAGACTTTTCGCAGTTCCGGTAATCTGAAGAGTCACGTGCACGTCCATACCGACGGAAAGTTCAAATGTCCcgtctgtaataagacttttaataGTACCGGTCGTTTGAAGAGGCACGTGCGTATTCACACCGGCGAgaaacctttcaaatgttcaTCATGCGGTAAAGCGTATCGTCGGTCTACGGATCTGAAGAAGCACATGCGCGTTCACACGAGCGAAAAGCCTTTCAAGTGTCCCGTCTGTAACGGCACGTTCAATAGTTCCGCTAACTTGAAGAGTCACACGCGTCTTCATACGGGCGAGAGGCCTTTCAAATGTTCCGTTTGTGGCAAGGCTTTCAATCAGTCGGGCGTGTTGAAAAGGCACGTGCATATCCATACCGGCGAAAAGCCTTTCAAGTGTCCCGTCTGTGACGGCACGTTCAGTAGTTCCGCTAACTTGAAGAGTCACACGCGTATTCATACGGGCGAGAGGCCTTTCAAATGTTCCGTTTGTGGCAAGGCTTTCAATCAGTCGGGCGTGTTGAAAAGGCACGTGCGTATCCATACCGGCGAAAAGGGTTTTAAGTGTCCCGTTTGCGGCAAGACTTTCGGTCGGTCTGGCGTCTTGAGACGGCACATGCGCATCCATACGGGCGTGAAGCCGTTTGAATGTTCCTAA
- Protein Sequence
- MNATICDWCMREAPVQIIEGNLWRFWKIISAEDPLVISHRNICKRCESRYEEFYTYIEKCKLHASVIQEIECRSIEEESWNPPGVHSGDGPFECQSCRKAFTRSTGLKTHMRLHTGEKPFKCSLCDKAFNQYGSLKRHTYTHTGEKPLKCPSCDRAFRQSRDLETHVRLHTGEKPFKCSLCNETFRSSGNLKSHVHVHTDGKFKCPVCNKTFNSTGRLKRHVRIHTGEKPFKCSSCGKAYRRSTDLKKHMRVHTSEKPFKCPVCNGTFNSSANLKSHTRLHTGERPFKCSVCGKAFNQSGVLKRHVHIHTGEKPFKCPVCDGTFSSSANLKSHTRIHTGERPFKCSVCGKAFNQSGVLKRHVRIHTGEKGFKCPVCGKTFGRSGVLRRHMRIHTGVKPFECS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00392931;
- 90% Identity
- iTF_00392931;
- 80% Identity
- iTF_00392931;