Cpri018666.1
Basic Information
- Insect
- Cryptocephalus primarius
- Gene Symbol
- -
- Assembly
- GCA_963576515.1
- Location
- OY754956.1:4862182-4863800[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.1 1.3e+03 -0.2 0.0 19 46 106 133 96 136 0.83 2 13 8.4e-05 0.05 13.9 0.0 24 47 139 162 132 168 0.86 3 13 2.2 1.3e+03 -0.3 0.3 22 32 165 175 162 190 0.77 4 13 8.4e-06 0.005 17.1 0.0 21 52 192 223 184 225 0.87 5 13 0.00072 0.44 10.9 0.0 20 44 247 271 236 275 0.86 6 13 0.00048 0.29 11.5 0.0 21 52 276 307 273 308 0.90 7 13 0.1 63 4.0 0.0 21 44 304 327 302 331 0.85 8 13 0.0034 2.1 8.7 0.0 21 52 332 363 329 363 0.89 9 13 0.011 6.9 7.1 0.0 21 46 360 385 358 388 0.90 10 13 0.015 8.9 6.7 0.2 22 52 389 419 386 419 0.85 11 13 0.00011 0.069 13.5 0.0 21 52 416 447 413 448 0.90 12 13 0.77 4.6e+02 1.2 0.0 21 46 444 469 442 473 0.89 13 13 0.014 8.5 6.8 0.1 21 51 472 501 469 503 0.91
Sequence Information
- Coding Sequence
- ATGGACCGTATTGAGGCGAGTACGTGCGACTGGTGCTCGGAGGGGGCGCCGGTGCGGACGATCCAGGAAaggttatggcgcttctggaagataatcagcgcagagTACCCCGTCCTGGAGTCCCGTAGGAACATCTGCGAGGCCTGTGAATCACGGTACGAGGAGTTCATGGCGTACGTCGAGGCGTGTAAGGCGAACGCGTCGTTGGTGGAGAGGGTGCTGGCGCCTGGACGGGTCGAGGAGGGACCTTCGGACGATCACGTGTGCCGTCCGTCGGTCAAGGAGGAGATCCCAAGGGAGGACGAATCCGGCCCGAGCCTTTCTCGGtcgccttttaaatgttcgtaCTGCGGTAAGGGTTACGTTCGGTCTAGCGATCTGACGAAGCACGTGCGACTTCACACGGGCGAGGCGGCGCTTAAATGTCCCGTCTGCGGTAAGGCTTTCACCCAGTCGGGTAATTTGAAACGGCACGTGCGCCTCCATGCGGTCGAGGTGCCTTTCAGGTGCCCCGTCTGCGATAAGACTTGCACTCGGCTCGACGGTTTGACGATGCACATGCGCGTTCACACGGGCGAACggccttttaagtgttccatATGCGACAAGGTCTTTACTCAGTCCGGTAATTTGAGGACGCACATGCGGAtccatacgggcgagaagccgtTTAGGTGTACCGAGTGCGGTGAAAGTTTTACTCTTTCCGACGGTTTGAAGAAGCACATGCGCGTTCATACGGGCGAAGAGCCTTTCGTTTGCCCCAtttgtaataaggcttttactcagtcGGGTAGTTTGAAGGTGCACATGATCGtccatacgggcgagaagccctTCGAATGTTCCGTTTGTAATGCGGGGTTTAATCGATCTGGTAATTTGAACAAGCATATGCGGCTTCATACGGGTGAGAAACCTTTCAAATGTCCCGTCTGTGATAAGGCCTTCACGCTCTCCGACGGTTTGAAAATGCACATGTGCGTtcatacgggcgagaagccttGTAAATGTCTCATATGTGATAAGACGTTTACATGGTCCGGTAATTTGAATAAGCACATGCGGCTTCATACCGGCGAGAAACCTTTCAAGTGTCCCGTCTGCGGCAAGACTTGCGCTCGTTCCGACGGTTTGAAGaagcacatgcgcattcatacaggtgagaagcTTTGTAAGTGCTCCATCTGTGAGAAGGCCTTTACCTGCtcgagtaatttaaaaaagcacgTACGGCTCCACACGGGCGAGAAACCTTTCAAGTGTCCCGTCTGTGGTAAGATCTTCAACGAATCGGCCGCCTTGAGACAGCACGTGCGCCTTCACacgggtgaaaagccttttaaatgttccacctgtgATGCGGCGTTCGCCCGGTACTGGGATTTGAAGACGCATGTGCGTCTTCATACCGGCGAAGATCCTTTCAAATGTTCCATATGCCGTAGGAGTTTCACTCGGTCCGGCGGTTTGAAGAAGCACATGCTTCGTCATACCTGCAAAGAGCCTTATTAA
- Protein Sequence
- MDRIEASTCDWCSEGAPVRTIQERLWRFWKIISAEYPVLESRRNICEACESRYEEFMAYVEACKANASLVERVLAPGRVEEGPSDDHVCRPSVKEEIPREDESGPSLSRSPFKCSYCGKGYVRSSDLTKHVRLHTGEAALKCPVCGKAFTQSGNLKRHVRLHAVEVPFRCPVCDKTCTRLDGLTMHMRVHTGERPFKCSICDKVFTQSGNLRTHMRIHTGEKPFRCTECGESFTLSDGLKKHMRVHTGEEPFVCPICNKAFTQSGSLKVHMIVHTGEKPFECSVCNAGFNRSGNLNKHMRLHTGEKPFKCPVCDKAFTLSDGLKMHMCVHTGEKPCKCLICDKTFTWSGNLNKHMRLHTGEKPFKCPVCGKTCARSDGLKKHMRIHTGEKLCKCSICEKAFTCSSNLKKHVRLHTGEKPFKCPVCGKIFNESAALRQHVRLHTGEKPFKCSTCDAAFARYWDLKTHVRLHTGEDPFKCSICRRSFTRSGGLKKHMLRHTCKEPY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00392916;
- 90% Identity
- iTF_00392916;
- 80% Identity
- iTF_00392916;