Basic Information

Insect: Cryptocephalus primarius
Gene Symbol: -
Assembly: GCA_963576515.1
Location: OY754954.1:2982705-2989383[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.05 2.9 8.7 1.3 2 23 171 193 171 193 0.96

2 20 0.23 13 6.7 1.4 1 20 319 338 319 340 0.93

3 20 0.14 7.9 7.3 2.6 1 23 369 392 369 392 0.91

4 20 5.6 3.2e+02 2.3 0.1 5 20 402 417 401 419 0.91

5 20 0.075 4.3 8.2 0.2 1 23 425 448 425 448 0.90

6 20 0.00024 0.014 16.0 2.7 2 23 526 548 526 548 0.97

7 20 0.16 9.4 7.1 0.1 1 23 565 587 565 587 0.89

8 20 0.0048 0.28 11.9 2.7 2 23 591 612 590 612 0.96

9 20 0.13 7.4 7.4 0.0 3 23 641 661 639 661 0.95

10 20 0.006 0.35 11.6 0.2 1 23 672 695 672 695 0.96

11 20 0.075 4.3 8.2 3.1 2 23 709 730 709 730 0.97

12 20 7.9e-05 0.0046 17.5 8.5 1 23 758 780 758 780 0.98

13 20 0.0019 0.11 13.2 0.4 1 23 825 847 825 847 0.96

14 20 0.0046 0.27 12.0 0.5 2 23 862 884 861 884 0.93

15 20 0.00027 0.015 15.9 2.4 1 23 902 924 902 924 0.93

16 20 1.9 1.1e+02 3.7 0.1 1 23 975 998 975 998 0.93

17 20 0.00018 0.01 16.4 1.4 2 23 1009 1030 1009 1030 0.97

18 20 0.00025 0.014 16.0 0.4 1 23 1057 1080 1057 1080 0.96

19 20 5.1e-05 0.003 18.1 2.0 1 23 1088 1110 1088 1110 0.98

20 20 0.00018 0.01 16.4 0.1 1 23 1125 1148 1125 1148 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.05	2.9	8.7	1.3	2	23	171	193	171	193	0.96
2	20	0.23	13	6.7	1.4	1	20	319	338	319	340	0.93
3	20	0.14	7.9	7.3	2.6	1	23	369	392	369	392	0.91
4	20	5.6	3.2e+02	2.3	0.1	5	20	402	417	401	419	0.91
5	20	0.075	4.3	8.2	0.2	1	23	425	448	425	448	0.90
6	20	0.00024	0.014	16.0	2.7	2	23	526	548	526	548	0.97
7	20	0.16	9.4	7.1	0.1	1	23	565	587	565	587	0.89
8	20	0.0048	0.28	11.9	2.7	2	23	591	612	590	612	0.96
9	20	0.13	7.4	7.4	0.0	3	23	641	661	639	661	0.95
10	20	0.006	0.35	11.6	0.2	1	23	672	695	672	695	0.96
11	20	0.075	4.3	8.2	3.1	2	23	709	730	709	730	0.97
12	20	7.9e-05	0.0046	17.5	8.5	1	23	758	780	758	780	0.98
13	20	0.0019	0.11	13.2	0.4	1	23	825	847	825	847	0.96
14	20	0.0046	0.27	12.0	0.5	2	23	862	884	861	884	0.93
15	20	0.00027	0.015	15.9	2.4	1	23	902	924	902	924	0.93
16	20	1.9	1.1e+02	3.7	0.1	1	23	975	998	975	998	0.93
17	20	0.00018	0.01	16.4	1.4	2	23	1009	1030	1009	1030	0.97
18	20	0.00025	0.014	16.0	0.4	1	23	1057	1080	1057	1080	0.96
19	20	5.1e-05	0.003	18.1	2.0	1	23	1088	1110	1088	1110	0.98
20	20	0.00018	0.01	16.4	0.1	1	23	1125	1148	1125	1148	0.97

Sequence Information

Coding Sequence: ATGGCCGACACGAGGCACGGCAACTTCCAATCGTGCTGCCGACTCTGCCTGAACGAGAAGGTCGAAAATCTGAAGCCCGTCTTCGGCGACGATGGCGCGCTGGCCGAGAGGATCGCCGAGTTCGTCTCCGTCGAGATCCAAACGACTGATAAATTGTCGACAAAAGTCTGCGACCAGTGTATCATGAAAGTGAACCATTGGCACGCCTACAAGCAACGATGTGTCCGAAACCAAAGTAAACTAGTGCAATGGATGAACGGCGACAACGCGCAGAGCAACGGATTCCCCGAATTGCTCAACATGAATCTGCAGATTAAACAAGAACTGAAGGATGTCACCGATAACGGCCCGCACGTTGAACAAGTAGAGGCCATCACTATTAAACCTGAACCGATCGAGCTGCACGATGAATCTATGGAGGAGGAGTACAACGAGCTACCACCTGACCTCACCCCTGAGGTCAGCCTGGGGACGGAGGAGGACATGAACGGTGATGATGAAAGTAGTAGACGGTGTAGTATCTGTTATAAGCTTTTTAGCAATGTAGGGAACAAAAAGAAGCACGAGAAAAGTATTCATCGAATGCATGGAGCCTCTCGCAAAAGTATTCTTAATGTTGACACCGAGCCTTCCTTCAATGGCAGTTTCTATGATGACATGGCCCAGGAGGAATCCTCCCTGAACTTCGACCCGGACCGCTCACAATCCACCTCAATTGAACAAGACTTGGAACAGGAGAAGATTCAATACGCAGCAGGTTTAAAGCTGATCCAGACGAACTCGACTCCGATCTCCATGGAGCCTTTATCGAAAATCGAGCTGAGCTACATCGAGAAGTGCAAGGCCATGGTGACCATGCACAAGACTCTGGAGTGCGCCTGCCATAACGTCACCCACCACAACCTCAAGGGGTTGCTTTCTCATTTACGCGCCTTGAGGATATGGTTCCCGGTCTTCACCTGCTATAGCTGCATGATCACCTTCACCGACAGATCGACTTTCACCAAACACAACATGCGCTGCCCCAACGCACAACTAGGGACGTTGATGAAACTCAGCAACCTGAAAAAACGTAGCGAGGTCAAGACCAGGCTGTACCAGAATTTCCGTTGCACATTGTGTAAGTTCATGTATACTTTTCACGAAGACTTCATCAAGCACGTCGATGAGGACCATGGGTCTGTCGAACTACCCATCGTGTGCACTTGCAGCAGGCAATTCGACACTCTAGAAGATTATAAGGATCACATTTATGTCAGTTGCATGGTGGACTTTTACTGTGACATTTGTTTCATTACCACCAAAACACTAGAAGGTTTTCAGAAGCATGCCGCTGAGGTTCATGACAACTCCGACGGATTTATATTGCTGCAAGATGATAATTACAAAGCCAGAAGGGCGTTGGCGAATACAAGCAGTAACATTTCTAAGGAGTTCGTAGACGAAAGTGCTATTATCACTGGTAAAAGAGAACGTAGGGCCTCTCAAAGGATCCCCTTGGAGGAATATGACGACTCTGCACCCAATAACAAAGTAGTCATCAATCCAGTAGTCGGAGCTAAAACTCAAAACCGTGTATGTCCGGAGTGTAATAAAGAATACTGCTCTTACAATAACATGATGAGACATTACAGGACACGACATGTAAAACAGAAAGGTAAAATCAAGACAGACTTAGGAGAAAGTTCTTATTATTCTTGCCCAGATTGCAATGAAATGTACCAGGCAGACGTTTGGCAGAATCACTTGATCGAGAACCATCAACCGAAATCATGCGACAAGTGTGACAAAGTGTTCCAGTTCCAGACCGAGCTGGATCACCACAGATCTGTCCATCTAAATCTGAAAGTATATAGAGACTCCAAGACCCAATCATACAAGAGCACGGTGATCAGTCCTGGCGCCGAGAAATTAATCATTTGTGACATTTGCGACGTGGCTTTCCAATCTCAAATCGAATTTGACGATCATAAACTTATGCATGAAAACAATACTGCTGTGGAAGACAAACGATTCGCCTGTCTCATTTGCAAGAAAACTTATGCCAGCTACGCCGGTTTATGGGAGCACAACAGGAGCAAACACCCTGAGAAGAAGACCCCCTACCAGAGTTCCTGGCCGAGGAAGTGCGATCAGTGTGATAAAGTGTGCCATACTGGAGCTGCTTTGTACCGACACAAACAAATTCACAATAAGGACCCAGTACCTAACGATGCAAACAGGAGATCGTCCGTGAAACCCAAGAAGAGTTCCGAGGAAGACGAATCTTACCATACCTGCAACAAATGTTTCAAAGTCTTCTCTTCCCGATGTAACTTGAAGAACCACATGAAATCGCACGGTACGAGTCAGGCGACAACTAAACGACAAAAGCAAAAGGCTGCAGTCAATGTGAAAGAAGAGAACGTTTCAGAGGGTGATGATGATTTACCCGATCTGACCAAAGAATCTGATACTAAAGTGCCTCTTATATTTACTTGTGACGTATGCGTCATGACGTTCCCTTCGAAGAACGCTTTAAAGACTCATAAAGAAGAACACGAACTGGAAGAGAAGCCTTCCACTAGGAGGTTGAACCGAATATACTGCAAACACTGTAAAATACCCTTCGCGAGTACGATGTTACTGGCGAAGCACATGGATCTGGAGCACAACGAGGCGGTCAAGACGAAAATAGGCAAATCTGGGGGAAAGAACCAACAGTTCTCTTGTCATATCTGCAAGAAATCTTTCCATTCGTCGGCAGCATTGACCACTCACGTCGGCTGGCATAAACGTGGCTTGGACATTAACCACTCGGGCAACGCTTCTTCCGGTAAGCCGCCGAAGTTGCTGAAACAGCCTAAACTCGAAAAACCAGCCACAGCCGTCAGAACCAGACCTCCAGTCGCCGTAGTACAAGTCAAGCCCAACCTCCACCCATTCCAGTGCACTACATGCTTGGCTCAACTGCCGAATGAGACAGCCCTTCAGGTGCACGTCCTAGAAAACCACCGCAGCGTGAGCGCCATCATGCTGCTGCCGAGGTGCAATATCTGCAGCAAAGACTTCAACACCCAGGACGAGTACGAGAACCACAAGCGCCTTCACGATTTCCTCGAGAGGCAGAAGCAGCACGAGAACAAGATGATGATCGAGCAACAAGACTCGAAAAAGTACCAGAAGAACTTTCCGTGCAACTACTGCACCGCCGGGTTCAGTCGGTCCGACACGCTCGCCACACACGTCAAGCAGTACCACAAGGAGTACATCCAGACGGAGTTCAGGTGCCCGCACTGCGACAGACTCTTCGAGAAGCAAAACTCCCTCACGATACACTTGAAGGTTCACGAGAAGCAGAAGGTGCTCTTGGACGACAGCTCCAGGCGCCTGTACTCCTGTTCCATCTGCAACATGGGGTTCAATGTACCCAAGGATCTGCGAGCGCATACGATCACCAGCCATCCCTTCTGA
Protein Sequence: MADTRHGNFQSCCRLCLNEKVENLKPVFGDDGALAERIAEFVSVEIQTTDKLSTKVCDQCIMKVNHWHAYKQRCVRNQSKLVQWMNGDNAQSNGFPELLNMNLQIKQELKDVTDNGPHVEQVEAITIKPEPIELHDESMEEEYNELPPDLTPEVSLGTEEDMNGDDESSRRCSICYKLFSNVGNKKKHEKSIHRMHGASRKSILNVDTEPSFNGSFYDDMAQEESSLNFDPDRSQSTSIEQDLEQEKIQYAAGLKLIQTNSTPISMEPLSKIELSYIEKCKAMVTMHKTLECACHNVTHHNLKGLLSHLRALRIWFPVFTCYSCMITFTDRSTFTKHNMRCPNAQLGTLMKLSNLKKRSEVKTRLYQNFRCTLCKFMYTFHEDFIKHVDEDHGSVELPIVCTCSRQFDTLEDYKDHIYVSCMVDFYCDICFITTKTLEGFQKHAAEVHDNSDGFILLQDDNYKARRALANTSSNISKEFVDESAIITGKRERRASQRIPLEEYDDSAPNNKVVINPVVGAKTQNRVCPECNKEYCSYNNMMRHYRTRHVKQKGKIKTDLGESSYYSCPDCNEMYQADVWQNHLIENHQPKSCDKCDKVFQFQTELDHHRSVHLNLKVYRDSKTQSYKSTVISPGAEKLIICDICDVAFQSQIEFDDHKLMHENNTAVEDKRFACLICKKTYASYAGLWEHNRSKHPEKKTPYQSSWPRKCDQCDKVCHTGAALYRHKQIHNKDPVPNDANRRSSVKPKKSSEEDESYHTCNKCFKVFSSRCNLKNHMKSHGTSQATTKRQKQKAAVNVKEENVSEGDDDLPDLTKESDTKVPLIFTCDVCVMTFPSKNALKTHKEEHELEEKPSTRRLNRIYCKHCKIPFASTMLLAKHMDLEHNEAVKTKIGKSGGKNQQFSCHICKKSFHSSAALTTHVGWHKRGLDINHSGNASSGKPPKLLKQPKLEKPATAVRTRPPVAVVQVKPNLHPFQCTTCLAQLPNETALQVHVLENHRSVSAIMLLPRCNICSKDFNTQDEYENHKRLHDFLERQKQHENKMMIEQQDSKKYQKNFPCNYCTAGFSRSDTLATHVKQYHKEYIQTEFRCPHCDRLFEKQNSLTIHLKVHEKQKVLLDDSSRRLYSCSICNMGFNVPKDLRAHTITSHPF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00392084;
90% Identity: -
80% Identity: -