Basic Information

Insect: Cryptocephalus primarius
Gene Symbol: -
Assembly: GCA_963576515.1
Location: OY754949.1:5948155-5953393[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.1e-06 6.6e-05 23.3 1.2 1 23 291 313 291 313 0.99

2 12 9.4e-07 5.5e-05 23.6 7.3 1 23 319 341 319 341 0.98

3 12 4.8e-06 0.00027 21.4 0.8 1 23 347 369 347 369 0.99

4 12 0.049 2.8 8.8 4.1 1 23 375 397 375 397 0.95

5 12 7.5e-05 0.0044 17.6 1.6 1 23 403 425 403 425 0.99

6 12 2.4e-08 1.4e-06 28.6 3.6 1 23 431 453 431 453 0.98

7 12 1.1e-05 0.00062 20.3 2.0 3 23 460 480 459 480 0.96

8 12 3.2e-06 0.00018 21.9 1.1 1 23 486 508 486 508 0.99

9 12 0.00023 0.013 16.1 0.7 3 23 515 535 513 535 0.97

10 12 2.2e-06 0.00013 22.4 4.2 2 23 542 563 541 563 0.98

11 12 5e-09 2.9e-07 30.7 0.8 1 23 569 591 569 591 0.99

12 12 1.3e-05 0.00073 20.0 1.6 1 23 597 619 597 619 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.1e-06	6.6e-05	23.3	1.2	1	23	291	313	291	313	0.99
2	12	9.4e-07	5.5e-05	23.6	7.3	1	23	319	341	319	341	0.98
3	12	4.8e-06	0.00027	21.4	0.8	1	23	347	369	347	369	0.99
4	12	0.049	2.8	8.8	4.1	1	23	375	397	375	397	0.95
5	12	7.5e-05	0.0044	17.6	1.6	1	23	403	425	403	425	0.99
6	12	2.4e-08	1.4e-06	28.6	3.6	1	23	431	453	431	453	0.98
7	12	1.1e-05	0.00062	20.3	2.0	3	23	460	480	459	480	0.96
8	12	3.2e-06	0.00018	21.9	1.1	1	23	486	508	486	508	0.99
9	12	0.00023	0.013	16.1	0.7	3	23	515	535	513	535	0.97
10	12	2.2e-06	0.00013	22.4	4.2	2	23	542	563	541	563	0.98
11	12	5e-09	2.9e-07	30.7	0.8	1	23	569	591	569	591	0.99
12	12	1.3e-05	0.00073	20.0	1.6	1	23	597	619	597	619	0.97

Sequence Information

Coding Sequence: ATGAATAGGATCGAGGTGAGCTGCTGCCGGACATGCCTTCGAATCGATTGCACGTTAACGCCGACCAGTACGGAGGACTCGGACTCCGTAAAGTACGAGGATAAGCTCTCATGTTGCGTGTCGGAAGTGtCTTGGTCGAAGGAGGGCTACCCACCTGTCATATGCGAGCACTGCATAGAGAAGCTCCGGGCAGCGTACGACTTCAGGACGATGTGCGTTCAGTCAGACGGCGCGCTCGCGAGGTACCTGGAACACATTCCGGTCGACGGAAAGCTGGAAGTCTCCCTGGAAGAAAGACCCCTGAACACACCGACCAAGTTCGAATTCGAGATCACGACCCAGGAGAACTCGGGCACAGAGCTAATTGTCGAGGATCAGCAGAGCGACGAGTATTTACACCTGAAACATTTCTTGGATAACGATGACTTGAATAAGCTCGAAAGGGACAAGTCACAATGTAGTACGCCTAACGATGATCAAGATTTCATCACCGAGGACCTGAATGATGATCGGCAGCTGCAAGGGATATGCGTCGACGATGATCAGCAGATTCCTTCGGACGATCCGCAGCTAGTCCAGCTACAAGAATCGATCGACGAACATCAGCAGACTGAGATCGATTTCGAGGAGCAGATTGATTTCCAAATCAAGGTGACGGAAACGCAGATAATACAGGGGGACGAGATGTCGACCTTAACGAACGAGGCCTCGATACAGACGCAGGTGCTGTTACCTGAAACGAATGCCATGACAAAATTACCTGCAGCGACGGGCAACTTACGGATGAAGCAAGTTATCAAGAGGACTACGGGTACGCAAGTGAGACTTCCCACGCCGACCAATGATACTGAAATTGATGGAAAGAAATTATATTCCTGCGTTGTATGCAACAAACAGTATCGCAAGAATGCAAACCTTAGGATACACATGAGGACACACACTGGAGAGAAGCCGTTTGAATGTAAATACTGCGACAAAAGGTTCTACCACTCATCTCACCTCAGGGAACACATCCGACGGCACACCGGTGAGAAACCGTTCCAGTGTGCTGTTTGCAACAAGAGGTTTACGATAAAAGGGGAGCTCACAATGCATATGAAGTCGCACACGGGAGAGAAGCCTTATGCTTGTACATGCTGCGATCGTAGGTGCTTAACTTCGGCCGACCTTAAGGTCCACATGCGCACCCACACCGGGGAGAAGCCGTTCACGTGCACGACCTGCGGCAAGAAGTTCGCGAGCACCTACATCCTGAACTCTCACATAAAGACGCACACGGGCGAGCGGCCGTACGCCTGCAAGGAGTGCGACAAGAAGTTCACGCAGAGCTCACACCTGAACGTCCACATGAGGAAGCACACGGGCGAGAAGGCGTCTTGCAGGCTCTGCGGGGCGAAGTTCACGCACTCTTCGCAGCTGACCGTGCACATGAGGGAGCACACCGGAAAGCAGCCGTACAAGTGTAGTATTTGTGATAAGGTGTGCAACTACGCGTCCGAGCTTCAGGTCCACGTGATGAAGCACACGGGCCAACGCTTCGGCTGCGTGACCTGCGACAAGAATTTCACCACGCTCGCCTACCTGAACGAGCACAACCGCACTCACACAGGCGAAAACCTGTCGACGTGCACGATCTGCGATAGGCGGTTCACCCGCCACCAATACCTGGTGAAGCACATGCGGACGCACACCGGCGAGAAACCGTACACGTGCGCCCAGTGCGGCAAAAGCTTCACGCAATCGTCGAGTCTGAGGGTGCACATGAGGATACACACGGGGGAGAAGCCCTACGCGTGCACGCAGTGCGAGAAGAGGTTCACGACGTCGTCGGACCTGTCGGTGCACTCCAAGAAGCATAAGAAGTACATTATGTTATAG
Protein Sequence: MNRIEVSCCRTCLRIDCTLTPTSTEDSDSVKYEDKLSCCVSEVSWSKEGYPPVICEHCIEKLRAAYDFRTMCVQSDGALARYLEHIPVDGKLEVSLEERPLNTPTKFEFEITTQENSGTELIVEDQQSDEYLHLKHFLDNDDLNKLERDKSQCSTPNDDQDFITEDLNDDRQLQGICVDDDQQIPSDDPQLVQLQESIDEHQQTEIDFEEQIDFQIKVTETQIIQGDEMSTLTNEASIQTQVLLPETNAMTKLPAATGNLRMKQVIKRTTGTQVRLPTPTNDTEIDGKKLYSCVVCNKQYRKNANLRIHMRTHTGEKPFECKYCDKRFYHSSHLREHIRRHTGEKPFQCAVCNKRFTIKGELTMHMKSHTGEKPYACTCCDRRCLTSADLKVHMRTHTGEKPFTCTTCGKKFASTYILNSHIKTHTGERPYACKECDKKFTQSSHLNVHMRKHTGEKASCRLCGAKFTHSSQLTVHMREHTGKQPYKCSICDKVCNYASELQVHVMKHTGQRFGCVTCDKNFTTLAYLNEHNRTHTGENLSTCTICDRRFTRHQYLVKHMRTHTGEKPYTCAQCGKSFTQSSSLRVHMRIHTGEKPYACTQCEKRFTTSSDLSVHSKKHKKYIML

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00392054;
90% Identity: -
80% Identity: -