Basic Information

Insect: Cryptocephalus primarius
Gene Symbol: -
Assembly: GCA_963576515.1
Location: OY754942.1:15642822-15649141[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 1.1e-07 6.4e-06 26.5 2.3 1 23 153 175 153 175 0.99

2 16 0.0044 0.26 12.0 2.4 2 23 186 207 185 207 0.97

3 16 0.004 0.23 12.2 0.6 1 23 214 236 214 236 0.93

4 16 2e-05 0.0012 19.4 0.4 1 23 335 357 335 357 0.99

5 16 0.00017 0.0096 16.5 4.3 2 23 364 385 363 385 0.95

6 16 3.4e-05 0.002 18.7 1.1 2 23 406 428 405 428 0.96

7 16 0.0025 0.14 12.8 2.0 2 23 507 528 506 528 0.96

8 16 7.1e-05 0.0041 17.7 0.7 1 23 534 557 534 557 0.93

9 16 7.6e-06 0.00044 20.7 1.5 1 23 562 584 562 584 0.98

10 16 7.4e-06 0.00043 20.8 1.5 2 23 595 616 594 616 0.97

11 16 2e-07 1.2e-05 25.7 0.9 1 23 623 645 623 645 0.97

12 16 3.2e-05 0.0019 18.8 1.6 3 23 657 677 655 677 0.92

13 16 0.0001 0.0058 17.2 4.6 1 23 683 705 683 705 0.99

14 16 4.4e-05 0.0026 18.3 1.7 1 23 711 733 711 733 0.96

15 16 8.1e-08 4.7e-06 26.9 0.2 1 23 739 761 739 761 0.99

16 16 0.00052 0.03 14.9 0.1 1 22 767 788 767 791 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	1.1e-07	6.4e-06	26.5	2.3	1	23	153	175	153	175	0.99
2	16	0.0044	0.26	12.0	2.4	2	23	186	207	185	207	0.97
3	16	0.004	0.23	12.2	0.6	1	23	214	236	214	236	0.93
4	16	2e-05	0.0012	19.4	0.4	1	23	335	357	335	357	0.99
5	16	0.00017	0.0096	16.5	4.3	2	23	364	385	363	385	0.95
6	16	3.4e-05	0.002	18.7	1.1	2	23	406	428	405	428	0.96
7	16	0.0025	0.14	12.8	2.0	2	23	507	528	506	528	0.96
8	16	7.1e-05	0.0041	17.7	0.7	1	23	534	557	534	557	0.93
9	16	7.6e-06	0.00044	20.7	1.5	1	23	562	584	562	584	0.98
10	16	7.4e-06	0.00043	20.8	1.5	2	23	595	616	594	616	0.97
11	16	2e-07	1.2e-05	25.7	0.9	1	23	623	645	623	645	0.97
12	16	3.2e-05	0.0019	18.8	1.6	3	23	657	677	655	677	0.92
13	16	0.0001	0.0058	17.2	4.6	1	23	683	705	683	705	0.99
14	16	4.4e-05	0.0026	18.3	1.7	1	23	711	733	711	733	0.96
15	16	8.1e-08	4.7e-06	26.9	0.2	1	23	739	761	739	761	0.99
16	16	0.00052	0.03	14.9	0.1	1	22	767	788	767	791	0.91

Sequence Information

Coding Sequence: ATGATTAATAAAGAAGTGGAATTAATAATAGATAAAATTTGTAGGTGCTGCATGTGCGAGAACGAAAACATGCACAACATATTCGACCCAGAGACTGATGGTAACAACTCAAATTCACCATCACTGTTAGAGATGCTCATAGCTTGTGCTTCGATAGAGGTGAACGCGAAAGACGGTTTACCAAATAATCTATGCGAAGGTTGTGAAGGAAAATTAAAGACAGCTTACGAGTTCAGGACCCTCTGCCAGAAATCCGACACTGCCCTAAGAGACCTAACGGTAACAGACAGCAAAAAGGTATCTCTTAACAAAGAGGAATCAATAGTCGTCCAGCCCGATGTACCCAACGACCTATTCAATGATAACGACCTATTTGATGATGAAGATGACCTGCCATTGGTACAGAGGGAGTGTAAACGTAAACGTGGCAGGCCGAGGAAAACAGGCGCCCAAAGCTACAagtgtaaaatttgtaaaaaagtgttCACTTCTCAGAAAGACTTAAAAGTGCATTTACAAACCCACATTGAAGATAAGATCTTTGATAAAGTACAGCAGTGCTTGTTTTGCGACGTTAAGTACTCCCGGCTCAATCATCTAGTGCGTCACATAACAAAACATGATAAACCGGGTCTGAAACATTCCTGTGGTAagtgcgacaaaacatttgatgCCGCCGTCGACCTCCTTAGGCATTCGAGTGAACATGTAAATAGTGAAAACAGTGACGATCCAGTCGAGAAACAAGTCATCAAGGTCGAATCCGAAACAGACATCAAAATGGAAGCAAACGAACCGGCTAATACTGTCATAGAAACAAATACAGAACCGCCCGATCACAATGATACGCTCGTCAATTCTACTGCCAGTTTTGATGATTTCCCCTTCAGTGACATTGATGACCATGCGGATTCTGATGACGGCGACTTCTTCGCCGAATATGAAGAGAAGAAGGAGAACAAGAAAAAGCCGAAAAGGAATGGTAAAGACAGCGACACGCTTTACGAATGTAAGGAATGCCCCAGAGTGTTAACGACATACATGGGATTGAAGATCCATATGAGGCGGCACACCGGatcttatttaattaaatgtgaGGTTTGTAATAAGTCGTTTAGTAAAACAAgtcatttaataaaacattcgCATATTCATGGACTCAATGATAAATTGAAAGGTGATACTAAGTCCGAGGGCAAAACAAAAGTGgaaattccaTGTGAGTACTGTGACAGAAAATTCAAGTATCGTAAAAGCTTCAGACAACACGTCAGAGTTGAACATGGGATATCTGACGTGGAGAGTGATATAGGAAAACCGACTGAAAACCACAGGAAACCAGAGAATGCCACGTCCAATGAAGAATCTTTTGAAGATTTACAGAATGAAGCAGACGGTGAACTTCCCACTGGCGACAATCTGGACTTAGATCAGCAGTTTGTTGAAGTGGATGGAGACTCCATCGTTAAGTTACAGGTCGATACGTCTAATATGAAGAAAATGAGGGCTAAAAATCAGGTTTGCCATGTATGTGCGGCCTCTTTTGATAGAGTGAACCATTTGACTCGACACATGACCTTGCATAGGTCTGTCCTAGTGCATCAGTGTGATCGATGTGAAAAGGCATTTGCTACAGAGGGCCACCTTAAAGCTCACATAGAAGACGAGCATATAAACAAGCCTTATATATGTACGGtttgtaataaacaatttaGTAGAGGCGAGCATTTGATACGACACTTGAAGGTACACCAAAGTAATCCTGACAAGGAAGAAAGTCTGAAATGCTCGATTTGTGATTCCGTTTTTACAAGGTCTGACCACTTGGCGCGACACACCAAAATCCATTTGCTACAGGATAAGCGACATGTTTGCGTGGATTGTGGTAAGGCCTTTAATAGGTTGGACAATTTAAGGACTCACCAGAGGATCCATACGGGAGTAAAAGATACTTCAAAATTGCACTTGTGCATTTATTGTGGGAAGGAATTCAATAATTCTAGTAACATGatTGTCCATATGAGACGGCACACCGGCGAACGACCATACAAATGTACTGAGTGCGGCAAGGGCTTCCCAAGATCACATGATTTAAAATGCCATGAACGTACACATTCAGGAGAAAAACCTTATTTATGCACATTGTGTGGCAAGTCGTTCAATAAGAGTAACAAGTTGTTGCGACACAGTCGCGTCCATACCGGTGAACGCCCATATGTGTGCAATATCTGTGGTCGGGCCTTCACTCAATCCAACGATCTGGCGCTGCACATGCGTCGTCACACGGGCGCTCGTCCGTACGCCTGCGGCGTTTGCCCCGCCAGGTTCATCCAATCTGGTCAACTGAAGAACCACAGGAGGGCTTCGGGTCACTGGATGGAGACCCAGCCTGATCTCAAGGGCGGACACCGGGTTGAGCCGGTCACCCCGGCGCACGAACCCATGCCTATCAGGTTTAAGTCTCATAAGGCGAAGAGCAAGGAGGAGCCGATGGAACCAGTCAAACCGGCCATAACTCCCATCGCGGACACGCAGTCCTCATTGGTGGAACAGTCCGTGAGTGTGGAAGAAATCCAGACCCAACCGCAGCGCATCCTGATGGGCATCATGGGAAATATCAAGTTGCAGAGCGACTCGCTGCTAATCGACAGCACGAAACTGGTAGAGCTCCACACCGGTCTCGTGAACTTGCCAACGGTTATACAGACGGCTAACGGGGAGGAGATCAAACTAAAGTCTGAAGTCCAAAACTTCAATATTACTCAGGTCGAGGAAGTAGATAAGGACGACGTGTCGGGTGGTTTCCAGGATGCAACGGTGATCTATTCGAACGTCGGGCATACATCAACTACGTTCACTActagtgaaaattttaattttcaaaattaccagtGA
Protein Sequence: MINKEVELIIDKICRCCMCENENMHNIFDPETDGNNSNSPSLLEMLIACASIEVNAKDGLPNNLCEGCEGKLKTAYEFRTLCQKSDTALRDLTVTDSKKVSLNKEESIVVQPDVPNDLFNDNDLFDDEDDLPLVQRECKRKRGRPRKTGAQSYKCKICKKVFTSQKDLKVHLQTHIEDKIFDKVQQCLFCDVKYSRLNHLVRHITKHDKPGLKHSCGKCDKTFDAAVDLLRHSSEHVNSENSDDPVEKQVIKVESETDIKMEANEPANTVIETNTEPPDHNDTLVNSTASFDDFPFSDIDDHADSDDGDFFAEYEEKKENKKKPKRNGKDSDTLYECKECPRVLTTYMGLKIHMRRHTGSYLIKCEVCNKSFSKTSHLIKHSHIHGLNDKLKGDTKSEGKTKVEIPCEYCDRKFKYRKSFRQHVRVEHGISDVESDIGKPTENHRKPENATSNEESFEDLQNEADGELPTGDNLDLDQQFVEVDGDSIVKLQVDTSNMKKMRAKNQVCHVCAASFDRVNHLTRHMTLHRSVLVHQCDRCEKAFATEGHLKAHIEDEHINKPYICTVCNKQFSRGEHLIRHLKVHQSNPDKEESLKCSICDSVFTRSDHLARHTKIHLLQDKRHVCVDCGKAFNRLDNLRTHQRIHTGVKDTSKLHLCIYCGKEFNNSSNMIVHMRRHTGERPYKCTECGKGFPRSHDLKCHERTHSGEKPYLCTLCGKSFNKSNKLLRHSRVHTGERPYVCNICGRAFTQSNDLALHMRRHTGARPYACGVCPARFIQSGQLKNHRRASGHWMETQPDLKGGHRVEPVTPAHEPMPIRFKSHKAKSKEEPMEPVKPAITPIADTQSSLVEQSVSVEEIQTQPQRILMGIMGNIKLQSDSLLIDSTKLVELHTGLVNLPTVIQTANGEEIKLKSEVQNFNITQVEEVDKDDVSGGFQDATVIYSNVGHTSTTFTTSENFNFQNYQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00392048;
90% Identity: -
80% Identity: -